Harnessing the power of RADseq for ecological and evolutionary genomics

KR Andrews, JM Good, MR Miller, G Luikart… - Nature Reviews …, 2016 - nature.com
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …

A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea

JD DiBattista, MB Roberts… - Journal of …, 2016 - Wiley Online Library
Abstract Aim The Red Sea is characterised by a unique fauna and historical periods of
desiccation, hypersalinity and intermittent isolation. The origin and contemporary …

Lost in parameter space: a road map for stacks

JR Paris, JR Stevens… - Methods in Ecology and …, 2017 - Wiley Online Library
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genotyping populations of model and non‐model organisms. Generating a …

Comparative phylogeography of the ocean planet

BW Bowen, MR Gaither, JD DiBattista… - Proceedings of the …, 2016 - National Acad Sciences
Understanding how geography, oceanography, and climate have ultimately shaped marine
biodiversity requires aligning the distributions of genetic diversity across multiple taxa. Here …

On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes

L Bernatchez - Journal of Fish Biology, 2016 - Wiley Online Library
The first goal of this paper was to overview modern approaches to local adaptation, with a
focus on the use of population genomics data to detect signals of natural selection in fishes …

Island biogeography of marine organisms

HT Pinheiro, G Bernardi, T Simon, JC Joyeux… - Nature, 2017 - nature.com
Studies on the distribution and evolution of organisms on oceanic islands have advanced
towards a dynamic perspective, where terrestrial endemicity results from island …

What is speciation genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species

CR Campbell, JW Poelstra… - Biological Journal of the …, 2018 - academic.oup.com
As is true of virtually every realm of the biological sciences, our understanding of speciation
is increasingly informed by the genomic revolution of the past decade. Investigators can ask …

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)

GJ McKinney, WA Larson, LW Seeb… - Molecular ecology …, 2017 - Wiley Online Library
In their recently corrected manuscript,“Breaking RAD: An evaluation of the utility of restriction
site associated DNA sequencing for genome scans of adaptation”, Lowry et al. argue that …

Detecting signatures of positive selection in non-model species using genomic data

H Weigand, F Leese - Zoological journal of the Linnean Society, 2018 - academic.oup.com
Understanding how natural selection shapes genetic variation in populations is of
paramount importance in evolutionary biology. Affordable high-throughput sequencing now …

Fishes that rule the world: circumtropical distributions revisited

MR Gaither, BW Bowen, LA Rocha… - Fish and Fisheries, 2016 - Wiley Online Library
Briggs () published the first checklist of circumtropical fishes with 107 species. This work
served for a half century as the most comprehensive checklist of globally distributed fishes …