CRISPR/cas systems redefine nucleic acid detection: principles and methods

M Wang, R Zhang, J Li - Biosensors and Bioelectronics, 2020 - Elsevier
Methods that enable rapid, sensitive and specific analyses of nucleic acid sequences have
positive effects on precise disease diagnostics and effective clinical treatments by providing …

From the pipeline to the bedside: advances and challenges in clinical metagenomics

A Dulanto Chiang, JP Dekker - The Journal of infectious …, 2020 - academic.oup.com
Next-generation sequencing (NGS) technologies have revolutionized multiple areas in the
field of infectious diseases, from pathogen discovery to characterization of genes mediating …

[HTML][HTML] Emergence in late 2020 of multiple lineages of SARS-CoV-2 Spike protein variants affecting amino acid position 677

EB Hodcroft, DB Domman, DJ Snyder, KY Oguntuyo… - MedRxiv, 2021 - ncbi.nlm.nih.gov
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein (S) plays
critical roles in host cell entry. Non-synonymous substitutions affecting S are not uncommon …

Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation

C Charre, C Ginevra, M Sabatier, H Regue… - Virus …, 2020 - academic.oup.com
Since the beginning of the COVID-19 outbreak, SARS-CoV-2 whole-genome sequencing
(WGS) has been performed at unprecedented rate worldwide with the use of very diverse …

[HTML][HTML] Immune cell infiltration landscapes in pediatric acute myocarditis analyzed by CIBERSORT

J Kawada, S Takeuchi, H Imai, T Okumura, K Horiba… - Journal of …, 2021 - Elsevier
Background Myocarditis is an inflammatory disease of the myocardium, which leads to
cardiac dysfunction and heart failure. Previous studies have suggested that complex cross …

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

H Sichtig, T Minogue, Y Yan, C Stefan, A Hall… - Nature …, 2019 - nature.com
FDA proactively invests in tools to support innovation of emerging technologies, such as
infectious disease next generation sequencing (ID-NGS). Here, we introduce FDA-ARGOS …

Pseudomonas aeruginosa: a clinical and genomics update

AC Pelegrin, M Palmieri, C Mirande… - FEMS Microbiology …, 2021 - academic.oup.com
Antimicrobial resistance (AMR) has become a global medical priority that needs urgent
resolution. Pseudomonas aeruginosa is a versatile, adaptable bacterial species with …

[HTML][HTML] Metagenomic next generation sequencing improves diagnosis of prosthetic joint infection by detecting the presence of bacteria in periprosthetic tissues

Y Cai, X Fang, Y Chen, Z Huang, C Zhang, W Li… - International Journal of …, 2020 - Elsevier
Objectives The purpose of this study was to explore the role of mNGS in the diagnosis of PJI
by detecting the presence of bacteria in periprosthetic tissues. Methods Patients who were …

Contamination issue in viral metagenomics: problems, solutions, and clinical perspectives

H Jurasz, T Pawłowski, K Perlejewski - Frontiers in Microbiology, 2021 - frontiersin.org
We describe the most common internal and external sources and types of contamination
encountered in viral metagenomic studies and discuss their negative impact on sequencing …

Detection of respiratory viruses directly from clinical samples using next‐generation sequencing: A literature review of recent advances and potential for routine …

X Wang, S Stelzer‐Braid, M Scotch… - Reviews in Medical …, 2022 - Wiley Online Library
Acute respiratory infection is the third most frequent cause of mortality worldwide, causing
over 4.25 million deaths annually. Although most diagnosed acute respiratory infections are …