Proteome turnover in the spotlight: approaches, applications, and perspectives

AB Ross, JD Langer, M Jovanovic - Molecular & Cellular Proteomics, 2021 - ASBMB
In all cells, proteins are continuously synthesized and degraded to maintain protein
homeostasis and modify gene expression levels in response to stimuli. Collectively, the …

Recent advances in isobaric labeling and applications in quantitative proteomics

MK Sivanich, TJ Gu, DN Tabang, L Li - Proteomics, 2022 - Wiley Online Library
Mass spectrometry (MS) has emerged at the forefront of quantitative proteomic techniques.
Liquid chromatography‐mass spectrometry (LC‐MS) can be used to determine abundances …

Multiplexed proteome dynamics profiling reveals mechanisms controlling protein homeostasis

MM Savitski, N Zinn, M Faelth-Savitski, D Poeckel… - Cell, 2018 - cell.com
Protein degradation plays important roles in biological processes and is tightly regulated.
Further, targeted proteolysis is an emerging research tool and therapeutic strategy …

Relative and absolute quantitation in mass spectrometry–based proteomics

JA Ankney, A Muneer, X Chen - Annual review of analytical …, 2018 - annualreviews.org
Mass spectrometry–based quantitative proteomics is a powerful tool for gaining insights into
function and dynamics of biological systems. However, peptides with different sequences …

Global and site-specific effect of phosphorylation on protein turnover

C Wu, Q Ba, D Lu, W Li, B Salovska, P Hou, T Mueller… - Developmental cell, 2021 - cell.com
To date, the effects of specific modification types and sites on protein lifetime have not been
systematically illustrated. Here, we describe a proteomic method, DeltaSILAC, to …

HyperSCP: Combining isotopic and isobaric labeling for higher throughput single-cell proteomics

Y Liang, T Truong, AJ Saxton, H Boekweg… - Analytical …, 2023 - ACS Publications
Recent developments in mass spectrometry-based single-cell proteomics (SCP) have
resulted in dramatically improved sensitivity, yet the relatively low measurement throughput …

Protein degradation on the global scale

EV Rusilowicz-Jones, S Urbé, MJ Clague - Molecular Cell, 2022 - cell.com
Protein degradation occurs through proteasomal, endosomal, and lysosomal pathways.
Technological advancements have allowed for the determination of protein copy numbers …

Peptide level turnover measurements enable the study of proteoform dynamics

J Zecha, C Meng, DP Zolg, P Samaras… - Molecular & Cellular …, 2018 - ASBMB
The coordination of protein synthesis and degradation regulating protein abundance is a
fundamental process in cellular homeostasis. Today, mass spectrometry-based …

Protein turnover in aging and longevity

N Basisty, JG Meyer, B Schilling - Proteomics, 2018 - Wiley Online Library
Progressive loss of proteostasis is a hallmark of aging that is marked by declines in various
components of proteostasis machinery, including: autophagy, ubiquitin‐mediated …

Functional translatome proteomics reveal converging and dose-dependent regulation by mTORC1 and eIF2α

K Klann, G Tascher, C Münch - Molecular cell, 2020 - cell.com
Regulation of translation is essential during stress. However, the precise sets of proteins
regulated by the key translational stress responses—the integrated stress response (ISR) …