Dynamics and function of DNA methylation in plants

H Zhang, Z Lang, JK Zhu - Nature reviews Molecular cell biology, 2018 - nature.com
DNA methylation is a conserved epigenetic modification that is important for gene regulation
and genome stability. Aberrant patterns of DNA methylation can lead to plant developmental …

The expanding world of small RNAs in plants

F Borges, RA Martienssen - Nature reviews Molecular cell biology, 2015 - nature.com
Plant genomes encode various small RNAs that function in distinct, yet overlapping, genetic
and epigenetic silencing pathways. However, the abundance and diversity of small-RNA …

DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development

L He, H Huang, M Bradai, C Zhao, Y You, J Ma… - Nature …, 2022 - nature.com
A contribution of DNA methylation to defense against invading nucleic acids and
maintenance of genome integrity is uncontested; however, our understanding of the extent …

RNA-directed DNA methylation

RM Erdmann, CL Picard - PLoS genetics, 2020 - journals.plos.org
RNA-directed DNA methylation (RdDM) is a biological process in which non-coding RNA
molecules direct the addition of DNA methylation to specific DNA sequences. The RdDM …

Suppressing a phosphohydrolase of cytokinin nucleotide enhances grain yield in rice

B Wu, J Meng, H Liu, D Mao, H Yin, Z Zhang, X Zhou… - Nature Genetics, 2023 - nature.com
One-step and two-step pathways are proposed to synthesize cytokinin in plants. The one-
step pathway is mediated by LONELY GUY (LOG) proteins. However, the enzyme for the two …

Alpha-ketoglutarate ameliorates age-related osteoporosis via regulating histone methylations

Y Wang, P Deng, Y Liu, Y Wu, Y Chen, Y Guo… - Nature …, 2020 - nature.com
Age-related osteoporosis is characterized by the deterioration in bone volume and strength,
partly due to the dysfunction of bone marrow mesenchymal stromal/stem cells (MSCs) …

DNA methylation pathways and their crosstalk with histone methylation

J Du, LM Johnson, SE Jacobsen… - Nature reviews Molecular …, 2015 - nature.com
Methylation of DNA and of histone 3 at Lys 9 (H3K9) are highly correlated with gene
silencing in eukaryotes from fungi to humans. Both of these epigenetic marks need to be …

Dynamics of DNA methylation and its functions in plant growth and development

S Kumar, T Mohapatra - Frontiers in Plant Science, 2021 - frontiersin.org
Epigenetic modifications in DNA bases and histone proteins play important roles in the
regulation of gene expression and genome stability. Chemical modification of DNA base …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

Epigenetic mechanisms of plant adaptation to biotic and abiotic stresses

VV Ashapkin, LI Kutueva, NI Aleksandrushkina… - International journal of …, 2020 - mdpi.com
Unlike animals, plants are immobile and could not actively escape the effects of aggressive
environmental factors, such as pathogenic microorganisms, insect pests, parasitic plants …