We survey parallel programming models and languages using six criteria to assess their
suitability for realistic portable parallel programming. We argue that an ideal model should …

Molecular docking, as one of the widely used virtual screening methods, aims to predict the
binding-conformations of small molecule ligands to the appropriate target binding site …

Following the initial release of LAPACK and the emerging importance of distributed memory
computing, work began on adapting LAPACK to distributed-memory architectures. Since …

Models of Computation.ppt [Read-Only] Page 1 Models of Computation John E Savage
Computer Science Brown University CBSSS 2004 July 16, 2004 Page 2 CBSSS: JE Savage …

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This paper describes capabilities, evolution, performance, and applications of the Global
Arrays (GA) toolkit. GA was created to provide application programmers with an inteface that …

for MIMD Distributed-Memory Machines: llel computing resents the only: usible way to
continue to increase the computational power available to scientists and engineers. Parallel …

The major reason for the lack of use'of parallel'computing, is the mismatch between the
complexity and variety of parallel hardware, and the software development tools to program …

This paper presents novel compiler optimizations for reducing synchronization overhead in
compiler-parallelized scientific codes. A hybrid programming model is employed to combine …

Massively parallel MIMD distributed-memory machines can provide enormous
computational power; however, the difficulty of developing parallel programs for these …