[HTML][HTML] Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin

G Nass Kovacs, JP Colletier, ML Grünbein… - Nature …, 2019 - nature.com
Bacteriorhodopsin (bR) is a light-driven proton pump. The primary photochemical event
upon light absorption is isomerization of the retinal chromophore. Here we used time …

Stochastic thermodynamics of active Brownian particles

C Ganguly, D Chaudhuri - Physical Review E, 2013 - APS
Examples of self-propulsion in strongly fluctuating environments are abundant in nature, eg,
molecular motors and pumps operating in living cells. Starting from the Langevin equation of …

Active brownian particles: Entropy production and fluctuation response

D Chaudhuri - Physical Review E, 2014 - APS
Abstract Within the Rayleigh-Helmholtz model of active Brownian particles, activity is due to
a nonlinear velocity-dependent force. In the presence of external trapping potential or …

Application of the fluctuation theorem to motor proteins: from F1-ATPase to axonal cargo transport by kinesin and dynein

K Hayashi - Biophysical reviews, 2018 - Springer
The fluctuation theorem is a representative theorem in non-equilibrium statistical physics
actively studied in the 1990s. Relating to entropy production in non-equilibrium states, the …

[HTML][HTML] Investigation of multiple-dynein transport of melanosomes by non-invasive force measurement using fluctuation unit χ

S Hasegawa, T Sagawa, K Ikeda, Y Okada… - Scientific reports, 2019 - nature.com
Pigment organelles known as melanosomes disperse or aggregate in a melanophore in
response to hormones. These movements are mediated by the microtubule motors kinesin-2 …

Viscosity and drag force involved in organelle transport: investigation of the fluctuation dissipation theorem

K Hayashi, CG Pack, MK Sato, K Mouri, K Kaizu… - The European Physical …, 2013 - Springer
We observed the motion of an organelle transported by motor proteins in cells using
fluorescence microscopy. Particularly, among organelles, the mitochondria in PC12 cells …

Entropy production by active particles: Coupling of odd and even functions of velocity

D Chaudhuri - Physical Review E, 2016 - APS
Nonequilibrium stochastic dynamics of several active Brownian systems are modeled in
terms of nonlinear velocity dependent force. In general, this force may consist of both even …

F-subunit reinforces torque generation in V-ATPase

J Kishikawa, A Seino, A Nakanishi, NE Tirtom… - European Biophysics …, 2014 - Springer
Vacuolar-type H+-pumping ATPases (V-ATPases) perform remarkably diverse functions in
eukaryotic organisms. They are present in the membranes of many organelles and regulate …

Intracellular force comparison of pathogenic KIF1A, KIF5, and dynein by fluctuation analysis

K Hayashi, S Matsumoto, T Naoi, Y Idobata - bioRxiv, 2021 - biorxiv.org
In mammalian cells, there exist approximately 40 types of microtubule motor proteins that
are assigned to specific cargo deliveries. For example, the kinesin-1 family motor KIF5 is the …

PROTEIN MOTOR F1 AS A MODEL SYSTEM FOR FLUCTUATION THEORIES OF NON-EQUILIBRIUM STATISTICAL MECHANICS

K Hayashi, R Hayashi - Fluctuation and Noise Letters, 2012 - World Scientific
F1-ATPase (F1) is a rotary motor protein in which the rotor γ subunit rotates in the α3β3 ring
hydrolyzing adenosine-5′-triphosphate (ATP). Several fluctuation theories of …