Epigenetic regulation in the tumor microenvironment: molecular mechanisms and therapeutic targets

J Yang, J Xu, W Wang, B Zhang, X Yu… - Signal transduction and …, 2023 - nature.com
Over decades, researchers have focused on the epigenetic control of DNA-templated
processes. Histone modification, DNA methylation, chromatin remodeling, RNA modification …

ATP-dependent chromatin remodeling during mammalian development

SK Hota, BG Bruneau - Development, 2016 - journals.biologists.com
Precise gene expression ensures proper stem and progenitor cell differentiation, lineage
commitment and organogenesis during mammalian development. ATP-dependent …

Arginine-enriched mixed-charge domains provide cohesion for nuclear speckle condensation

JA Greig, TA Nguyen, M Lee, AS Holehouse, AE Posey… - Molecular cell, 2020 - cell.com
Low-complexity protein domains promote the formation of various biomolecular
condensates. However, in many cases, the precise sequence features governing …

Human transcription factor protein interaction networks

H Göös, M Kinnunen, K Salokas, Z Tan, X Liu… - Nature …, 2022 - nature.com
Transcription factors (TFs) interact with several other proteins in the process of
transcriptional regulation. Here, we identify 6703 and 1536 protein–protein interactions for …

Identification of multiple distinct Snf2 subfamilies with conserved structural motifs

A Flaus, DMA Martin, GJ Barton… - Nucleic acids …, 2006 - academic.oup.com
The Snf2 family of helicase-related proteins includes the catalytic subunits of ATP-
dependent chromatin remodelling complexes found in all eukaryotes. These act to regulate …

Structural mechanism of extranucleosomal DNA readout by the INO80 complex

F Kunert, FJ Metzner, J Jung, M Höpfler, S Woike… - Science …, 2022 - science.org
The nucleosomal landscape of chromatin depends on the concerted action of chromatin
remodelers. The INO80 remodeler specifically places nucleosomes at the boundary of gene …

Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes

AJ Morrison, X Shen - Nature reviews Molecular cell biology, 2009 - nature.com
Chromatin-modifying factors have essential roles in DNA processing pathways that dictate
cellular functions. The ability of chromatin modifiers, including the INO80 and SWR1 …

The APC tumor suppressor counteracts β-catenin activation and H3K4 methylation at Wnt target genes

J Sierra, T Yoshida, CA Joazeiro… - Genes & …, 2006 - genesdev.cshlp.org
The APC tumor suppressor controls the stability and nuclear export of β-catenin (β-cat), a
transcriptional coactivator of LEF-1/TCF HMG proteins in the Wnt/Wg signaling pathway. We …

Chromatin‐remodeling complexes: Conserved and plant‐specific subunits in Arabidopsis

JY Shang, XJ He - Journal of integrative plant biology, 2022 - Wiley Online Library
Adenosine triphosphate‐dependent chromatin remodeling complexes are important for the
regulation of transcription, DNA replication, and genome stability in eukaryotes. Although …

Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex

Y Cai, J Jin, SK Swanson, MD Cole, SH Choi… - Journal of Biological …, 2010 - ASBMB
Human MOF (MYST1), a member of the MYST (Moz-Ybf2/Sas3-Sas2-Tip60) family of
histone acetyltransferases (HATs), is the human ortholog of the Drosophila males absent on …