[HTML][HTML] An introduction to and survey of biological network visualization

H Ehlers, N Brich, M Krone, M Nöllenburg, J Yu… - Computers & …, 2025 - Elsevier
Biological networks describe complex relationships in biological systems, which represent
biological entities as vertices and their underlying connectivity as edges. Ideally, for a …

[PDF][PDF] Designing computational evaluations for graph layout algorithms: the state of the art

S Di Bartolomeo, T Crnovrsanin, D Saffo, C Dunne - Companion, 2023 - files.osf.io
Computational evaluations and benchmarks are widely used for validating graph and
network layout algorithms (aka graph drawing). These evaluations can provide the reader …

Evaluating Graph Layout Algorithms: A Systematic Review of Methods and Best Practices

S Di Bartolomeo, T Crnovrsanin, D Saffo… - Computer Graphics …, 2024 - Wiley Online Library
Evaluations—encompassing computational evaluations, benchmarks and user studies—are
essential tools for validating the performance and applicability of graph and network layout …

Interactive 3D exploration of RDF graphs through semantic planes

F Viola, L Roffia, F Antoniazzi, A D'Elia, C Aguzzi… - Future Internet, 2018 - mdpi.com
This article presents Tarsier, a tool for the interactive 3D visualization of RDF graphs. Tarsier
is mainly intended to support teachers introducing students to Semantic Web data …

Algorithms and bounds for L-drawings of directed graphs

P Angelini, GD Lozzo, MD Bartolomeo… - … of Foundations of …, 2018 - World Scientific
We introduce L-drawings, a novel paradigm for representing directed graphs aiming at
combining the readability features of orthogonal drawings with the expressive power of …

Placing arrows in directed graph layouts: Algorithms and experiments

C Binucci, W Didimo, M Kaufmann… - Computer Graphics …, 2022 - Wiley Online Library
We study how to place arrow heads in directed graph drawings aiming at minimizing their
overlaps and avoiding intersections between arrow heads and edges. The objective is to …

Layered Graphs and Their Layouts, Evaluations, and Applications

S Di Bartolomeo - 2023 - search.proquest.com
Graphs are a fundamental data structure, used in many fields of human knowledge work. We
read, use, and categorize information through graphs in daily tasks: every time we read a …

An exact algorithm for the arrow placement problem in directed graph drawings

N Kido, S Masuda, K Yamaguchi - IEICE Transactions on …, 2019 - search.ieice.org
We consider the problem of placing arrows, which indicate the direction of each edge in
directed graph drawings, without making them overlap other arrows, vertices and edges as …

Bell 多項式を用いた帯域通過最大平たんFIR 分数階微分器

國井良介, 相川直幸 - 電子情報通信学会論文誌 A, 2018 - search.ieice.org
1 階微分器とは, 離散信号の時間/空間 1 階微分を計算するディジタル信号処理システムであり,
医用生体工学や画像工学などの様々なアプリケーションで用いられている. 一般に, 1 …

有向グラフ描画における矢じり配置問題に対する発見的手法

城戸直人, 増田澄男, 山口一章 - 電子情報通信学会論文誌 A, 2018 - search.ieice.org
有向グラフ描画において辺の向きを示す矢じりを, 他の矢じりや頂点, 辺とできるだけ重ならないよう
に配置する問題について考察する. この問題に対して, 矢じりの配置位置に制限を加えた場合の …