Review of multi-omics data resources and integrative analysis for human brain disorders

X Dong, C Liu, M Dozmorov - Briefings in functional genomics, 2021 - academic.oup.com
In the last decade, massive omics datasets have been generated for human brain research.
It is evolving so fast that a timely update is urgently needed. In this review, we summarize the …

Addressing Sample Mix‐Ups: Tools and Approaches for Large‐Scale Multi‐Omics Studies

Y Fu, ZF Yuan, L Wu, J Peng, X Wang, AA High - Proteomics, 2025 - Wiley Online Library
Advances in high‐throughput omics technologies have enabled system‐wide
characterization of biological samples across multiple molecular levels, such as the …

SMAP is a pipeline for sample matching in proteogenomics

L Li, M Niu, A Erickson, J Luo, K Rowbotham… - Nature …, 2022 - nature.com
The integration of genomics and proteomics data (proteogenomics) holds the promise of
furthering the in-depth understanding of human disease. However, sample mix-up is a …

Genetic regulation of human brain proteome reveals proteins implicated in psychiatric disorders

J Luo, L Li, M Niu, D Kong, Y Jiang, S Poudel… - Molecular …, 2024 - nature.com
Psychiatric disorders are highly heritable yet polygenic, potentially involving hundreds of risk
genes. Genome-wide association studies have identified hundreds of genomic susceptibility …

Idéfix: identifying accidental sample mix-ups in biobanks using polygenic scores

R Warmerdam, P Lanting, Lifelines Cohort Study… - …, 2022 - academic.oup.com
Motivation Identifying sample mix-ups in biobanks is essential to allow the repurposing of
genetic data for clinical pharmacogenetics. Pharmacogenetic advice based on the genetic …

A pipeline for sample tagging of whole genome bisulfite sequencing data using genotypes of whole genome sequencing

Z Xu, S Cheng, X Qiu, X Wang, Q Hu, Y Shi, Y Liu, J Lin… - BMC genomics, 2023 - Springer
Background In large-scale high-throughput sequencing projects and biobank construction,
sample tagging is essential to prevent sample mix-ups. Despite the availability of fingerprint …

[HTML][HTML] The impact of common variants on gene expression in the human brain: from RNA to protein to schizophrenia risk

Q Liang, Y Jiang, AW Shieh, D Zhou, R Chen, F Wang… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Background The impact of genetic variants on gene expression has been intensely studied
at the transcription level, yielding in valuable insights into the association between genes …

Unveiling cell-type-specific transcriptome and genetic regulation in postmortem brains of schizophrenia patients

R Dai - 2024 - soar.suny.edu
Schizophrenia is a complex psychiatric disorder with a poorly understood etiology. This
dissertation addresses three critical questions in schizophrenia research: identifying …

Cell group analysis reveals changes in upper-layer neurons associated with schizophrenia

R Dai, L Chen, S Liu, CT Wu, Y Chen, Y Jiang, J Dai… - bioRxiv, 2020 - biorxiv.org
Genome-wide association studies (GWAS) of schizophrenia (SCZ) have revealed over 100
risk loci. We investigated whether these SCZ-associated variants regulate gene expression …