Deep convolutional neural networks for brain image analysis on magnetic resonance imaging: a review

J Bernal, K Kushibar, DS Asfaw, S Valverde… - Artificial intelligence in …, 2019 - Elsevier
In recent years, deep convolutional neural networks (CNNs) have shown record-shattering
performance in a variety of computer vision problems, such as visual object recognition …

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction

A Makropoulos, EC Robinson, A Schuh, R Wright… - Neuroimage, 2018 - Elsevier
Abstract The Developing Human Connectome Project (dHCP) seeks to create the first 4-
dimensional connectome of early life. Understanding this connectome in detail may provide …

DeepNAT: Deep convolutional neural network for segmenting neuroanatomy

C Wachinger, M Reuter, T Klein - NeuroImage, 2018 - Elsevier
We introduce DeepNAT, a 3D Deep convolutional neural network for the automatic
segmentation of NeuroAnaTomy in T1-weighted magnetic resonance images. DeepNAT is …

Multimodal surface matching with higher-order smoothness constraints

EC Robinson, K Garcia, MF Glasser, Z Chen… - Neuroimage, 2018 - Elsevier
In brain imaging, accurate alignment of cortical surfaces is fundamental to the statistical
sensitivity and spatial localisation of group studies, and cortical surface-based alignment …

Performing group-level functional image analyses based on homologous functional regions mapped in individuals

M Li, D Wang, J Ren, G Langs, S Stoecklein… - PLoS …, 2019 - journals.plos.org
Functional MRI (fMRI) studies have traditionally relied on intersubject normalization based
on global brain morphology, which cannot establish proper functional correspondence …

Construction of a neonatal cortical surface atlas using multimodal surface matching in the developing human connectome project

J Bozek, A Makropoulos, A Schuh, S Fitzgibbon… - NeuroImage, 2018 - Elsevier
We propose a method for constructing a spatio-temporal cortical surface atlas of neonatal
brains aged between 36 and 44 weeks of post-menstrual age (PMA) at the time of scan. The …

Spectral log-demons: diffeomorphic image registration with very large deformations

H Lombaert, L Grady, X Pennec, N Ayache… - International journal of …, 2014 - Springer
This paper presents a new framework for capturing large and complex deformations in
image registration and atlas construction. This challenging and recurrent problem in …

Evolution of cortical geometry and its link to function, behaviour and ecology

E Schwartz, KH Nenning, K Heuer, N Jeffery… - Nature …, 2023 - nature.com
Studies in comparative neuroanatomy and of the fossil record demonstrate the influence of
socio-ecological niches on the morphology of the cerebral cortex, but have led to oftentimes …

Predicting activation across individuals with resting-state functional connectivity based multi-atlas label fusion

G Langs, P Golland, SS Ghosh - … , Munich, Germany, October 5-9, 2015 …, 2015 - Springer
The alignment of brain imaging data for functional neuroimaging studies is challenging due
to the discrepancy between correspondence of morphology, and equivalence of functional …

S3Reg: superfast spherical surface registration based on deep learning

F Zhao, Z Wu, F Wang, W Lin, S Xia… - IEEE transactions on …, 2021 - ieeexplore.ieee.org
Cortical surface registration is an essential step and prerequisite for surface-based
neuroimaging analysis. It aligns cortical surfaces across individuals and time points to …