Making sense of the ageing methylome

K Seale, S Horvath, A Teschendorff, N Eynon… - Nature Reviews …, 2022 - nature.com
Over time, the human DNA methylation landscape accrues substantial damage, which has
been associated with a broad range of age-related diseases, including cardiovascular …

Moving forward: Challenges and directions for psychopathological network theory and methodology

EI Fried, AOJ Cramer - Perspectives on Psychological …, 2017 - journals.sagepub.com
Since the introduction of mental disorders as networks of causally interacting symptoms, this
novel framework has received considerable attention. The past years have resulted in over …

Identification of antimicrobial peptides from the human gut microbiome using deep learning

Y Ma, Z Guo, B Xia, Y Zhang, X Liu, Y Yu, N Tang… - Nature …, 2022 - nature.com
The human gut microbiome encodes a large variety of antimicrobial peptides (AMPs), but
the short lengths of AMPs pose a challenge for computational prediction. Here we combined …

A lymphocyte–microglia–astrocyte axis in chronic active multiple sclerosis

M Absinta, D Maric, M Gharagozloo, T Garton… - Nature, 2021 - nature.com
Multiple sclerosis (MS) lesions that do not resolve in the months after they form harbour
ongoing demyelination and axon degeneration, and are identifiable in vivo by their …

Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer's disease

S Morabito, E Miyoshi, N Michael, S Shahin… - Nature …, 2021 - nature.com
The gene-regulatory landscape of the brain is highly dynamic in health and disease,
coordinating a menagerie of biological processes across distinct cell types. Here, we …

Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation

P Yu, X He, M Baer, S Beirinckx, T Tian, YAT Moya… - Nature plants, 2021 - nature.com
Beneficial interactions between plant roots and rhizosphere microorganisms are pivotal for
plant fitness. Nevertheless, the molecular mechanisms controlling the feedback between …

[PDF][PDF] Spatial transcriptomics and in situ sequencing to study Alzheimer's disease

WT Chen, A Lu, K Craessaerts, B Pavie, CS Frigerio… - Cell, 2020 - cell.com
Although complex inflammatory-like alterations are observed around the amyloid plaques of
Alzheimer's disease (AD), little is known about the molecular changes and cellular …

A scalable SCENIC workflow for single-cell gene regulatory network analysis

B Van de Sande, C Flerin, K Davie, M De Waegeneer… - Nature protocols, 2020 - nature.com
This protocol explains how to perform a fast SCENIC analysis alongside standard best
practices steps on single-cell RNA-sequencing data using software containers and Nextflow …

[PDF][PDF] G3BP1 is a tunable switch that triggers phase separation to assemble stress granules

P Yang, C Mathieu, RM Kolaitis, P Zhang, J Messing… - Cell, 2020 - cell.com
The mechanisms underlying ribonucleoprotein (RNP) granule assembly, including the basis
for establishing and maintaining RNP granules with distinct composition, are unknown. One …

Identification of early neurodegenerative pathways in progressive multiple sclerosis

M Kaufmann, AL Schaupp, R Sun, F Coscia… - Nature …, 2022 - nature.com
Progressive multiple sclerosis (MS) is characterized by unrelenting neurodegeneration,
which causes cumulative disability and is refractory to current treatments. Drug development …