Safety by design: Biosafety and biosecurity in the age of synthetic genomics

SA Hoffmann, J Diggans, D Densmore, J Dai, T Knight… - Iscience, 2023 - cell.com
Technologies to profoundly engineer biology are becoming increasingly affordable,
powerful, and accessible to a widening group of actors. While offering tremendous potential …

Beyond biosecurity by taxonomic lists: Lessons, challenges, and opportunities

P Millett, T Alexanian, KR Brink, SR Carter… - Health …, 2023 - liebertpub.com
Taxonomic lists—that is, lists that give a set of species (eg, Yersinia pestis) or broader
taxonomic groups (eg, SARS-related coronavirus) to be regulated—are a common tool used …

SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning

A Balaji, B Kille, AD Kappell, GD Godbold, M Diep… - Genome biology, 2022 - Springer
The COVID-19 pandemic has emphasized the importance of accurate detection of known
and emerging pathogens. However, robust characterization of pathogenic sequences …

Improved understanding of biorisk for research involving microbial modification using annotated sequences of concern

GD Godbold, FC Hewitt, AD Kappell… - … in Bioengineering and …, 2023 - frontiersin.org
Regulation of research on microbes that cause disease in humans has historically been
focused on taxonomic lists of 'bad bugs'. However, given our increased knowledge of these …

Regulating select agent chimeras: Defining the problem (s) through the lens of SARS-CoV-1/SARS-CoV-2 chimeric viruses

EW Wells, MT Parker - Health security, 2023 - liebertpub.com
In late 2021, the US Centers for Disease Control and Prevention (CDC) posted an interim
final rule (86 FR 64075) to the federal register regulating the possession, use, and transfer of …

Analysis of bronchoalveolar lavage fluid metatranscriptomes among patients with COVID-19 disease

M Jochum, MD Lee, K Curry, V Zaksas, E Vitalis… - Scientific Reports, 2022 - nature.com
To better understand the potential relationship between COVID-19 disease and
hologenome microbial community dynamics and functional profiles, we conducted a …

Annotation of Functions of Sequences of Concern and Its Relevance to the New Biosecurity Regulatory Framework in the United States

GD Godbold, MB Scholz - Applied Biosafety, 2024 - liebertpub.com
Introduction: Recent regulations from United States Government agencies reshape the
screening of synthetic nucleic acids. These take a step away from categorizing hazard on …

Practical Questions for Securing Nucleic Acid Synthesis

S Rose, T Alexanian, M Langenkamp… - Applied …, 2024 - liebertpub.com
Introduction: Affordable and accurate nucleic acid synthesis is foundational to modern
biotechnology, but raises security concerns because it facilitates the construction of …

Developing a Common Global Baseline for Nucleic Acid Synthesis Screening

NE Wheeler, SR Carter, T Alexanian, C Isaac… - Applied …, 2024 - liebertpub.com
Introduction: Nucleic acid synthesis is a powerful tool that has revolutionized the life
sciences. However, the misuse of synthetic nucleic acids could pose a serious threat to …

Function-based classification of hazardous biological sequences: Demonstration of a new paradigm for biohazard assessments

BT Gemler, C Mukherjee, CA Howland… - … in Bioengineering and …, 2022 - frontiersin.org
Bioengineering applies analytical and engineering principles to identify functional biological
building blocks for biotechnology applications. While these building blocks are leveraged to …