Cancer evolution: Darwin and beyond

R Vendramin, K Litchfield, C Swanton - The EMBO journal, 2021 - embopress.org
Clinical and laboratory studies over recent decades have established branched evolution as
a feature of cancer. However, while grounded in somatic selection, several lines of evidence …

[HTML][HTML] Clonal heterogeneity and tumor evolution: past, present, and the future

N McGranahan, C Swanton - Cell, 2017 - cell.com
Intratumor heterogeneity, which fosters tumor evolution, is a key challenge in cancer
medicine. Here, we review data and technologies that have revealed intra-tumor …

Chromothripsis as an on-target consequence of CRISPR–Cas9 genome editing

ML Leibowitz, S Papathanasiou, PA Doerfler… - Nature …, 2021 - nature.com
Genome editing has therapeutic potential for treating genetic diseases and cancer.
However, the currently most practicable approaches rely on the generation of DNA double …

[HTML][HTML] Most large structural variants in cancer genomes can be detected without long reads

ZN Choo, JM Behr, A Deshpande, K Hadi, X Yao… - Nature Genetics, 2023 - nature.com
Short-read sequencing is the workhorse of cancer genomics yet is thought to miss many
structural variants (SVs), particularly large chromosomal alterations. To characterize missing …

Mapping and characterization of structural variation in 17,795 human genomes

HJ Abel, DE Larson, AA Regier, C Chiang, I Das… - Nature, 2020 - nature.com
A key goal of whole-genome sequencing for studies of human genetics is to interrogate all
forms of variation, including single-nucleotide variants, small insertion or deletion (indel) …

Chromothripsis from DNA damage in micronuclei

CZ Zhang, A Spektor, H Cornils, JM Francis… - Nature, 2015 - nature.com
Genome sequencing has uncovered a new mutational phenomenon in cancer and
congenital disorders called chromothripsis. Chromothripsis is characterized by extensive …

Spatial and temporal diversity in genomic instability processes defines lung cancer evolution

EC De Bruin, N McGranahan, R Mitter, M Salm… - Science, 2014 - science.org
Spatial and temporal dissection of the genomic changes occurring during the evolution of
human non–small cell lung cancer (NSCLC) may help elucidate the basis for its dismal …

Extrachromosomal oncogene amplification in tumour pathogenesis and evolution

RGW Verhaak, V Bafna, PS Mischel - Nature Reviews Cancer, 2019 - nature.com
Recent reports have demonstrated that oncogene amplification on extrachromosomal DNA
(ecDNA) is a frequent event in cancer, providing new momentum to explore a phenomenon …

Boveri and beyond: Chromothripsis and genomic instability from mitotic errors

A Mazzagatti, JL Engel, P Ly - Molecular cell, 2024 - cell.com
Mitotic cell division is tightly monitored by checkpoints that safeguard the genome from
instability. Failures in accurate chromosome segregation during mitosis can cause …

Copy number signatures and mutational processes in ovarian carcinoma

G Macintyre, TE Goranova, D De Silva, D Ennis… - Nature …, 2018 - nature.com
The genomic complexity of profound copy number aberrations has prevented effective
molecular stratification of ovarian cancers. Here, to decode this complexity, we derived copy …