The past, present, and future of immune repertoire biology–the rise of next-generation repertoire analysis

A Six, ME Mariotti-Ferrandiz, W Chaara… - Frontiers in …, 2013 - frontiersin.org
T and B cell repertoires are collections of lymphocytes, each characterized by its antigen-
specific receptor. We review here classical technologies and analysis strategies developed …

The astonishing diversity of Ig classes and B cell repertoires in teleost fish

S Fillatreau, A Six, S Magadan, R Castro… - Frontiers in …, 2013 - frontiersin.org
With lymphoid tissue anatomy different than mammals, and diverse adaptations to all
aquatic environments, fish constitute a fascinating group of vertebrate to study the biology of …

Tumor response and endogenous immune reactivity after administration of HER2 CAR T cells in a child with metastatic rhabdomyosarcoma

M Hegde, SK Joseph, F Pashankar, C DeRenzo… - Nature …, 2020 - nature.com
Refractory metastatic rhabdomyosarcoma is largely incurable. Here we analyze the
response of a child with refractory bone marrow metastatic rhabdomyosarcoma to …

Controlling genetic heterogeneity in gene-edited hematopoietic stem cells by single-cell expansion

HJ Becker, R Ishida, AC Wilkinson, T Kimura, MSJ Lee… - Cell stem cell, 2023 - cell.com
Gene editing using engineered nucleases frequently produces unintended genetic lesions
in hematopoietic stem cells (HSCs). Gene-edited HSC cultures thus contain heterogeneous …

Analyzing immunoglobulin repertoires

N Chaudhary, DR Wesemann - Frontiers in immunology, 2018 - frontiersin.org
Somatic assembly of T cell receptor and B cell receptor (BCR) genes produces a vast
diversity of lymphocyte antigen recognition capacity. The advent of efficient high-throughput …

The analysis of clonal expansions in normal and autoimmune B cell repertoires

U Hershberg, ET Luning Prak - … Transactions of the …, 2015 - royalsocietypublishing.org
Clones are the fundamental building blocks of immune repertoires. The number of different
clones relates to the diversity of the repertoire, whereas their size and sequence diversity …

Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq

D Redmond, A Poran, O Elemento - Genome medicine, 2016 - Springer
Accurate characterization of the repertoire of the T-cell receptor (TCR) alpha and beta
chains is critical to understanding adaptive immunity. Such characterization has many …

Teleost fish mount complex clonal IgM and IgT responses in spleen upon systemic viral infection

R Castro, L Jouneau, HP Pham, O Bouchez… - PLoS …, 2013 - journals.plos.org
Upon infection, B-lymphocytes expressing antibodies specific for the intruding pathogen
develop clonal responses triggered by pathogen recognition via the B-cell receptor. The …

Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V (D) J sequencing

X Jin, W Zhou, M Luo, P Wang, Z Xu, K Ma… - Briefings in …, 2021 - academic.oup.com
The world is facing a pandemic of Corona Virus Disease 2019 (COVID-19) caused by
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Adaptive immune …

CD8+ T-cell pathogenicity in Rasmussen encephalitis elucidated by large-scale T-cell receptor sequencing

T Schneider-Hohendorf, H Mohan, CG Bien… - Nature …, 2016 - nature.com
Rasmussen encephalitis (RE) is a rare paediatric epilepsy with uni-hemispheric
inflammation and progressive neurological deficits. To elucidate RE immunopathology, we …