[图书][B] Computational topology for data analysis

TK Dey, Y Wang - 2022 - books.google.com
" In this chapter, we introduce some of the very basics that are used throughout the book.
First, we give the definition of a topological space and related notions of open and closed …

TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions

Z Cang, GW Wei - PLoS computational biology, 2017 - journals.plos.org
Although deep learning approaches have had tremendous success in image, video and
audio processing, computer vision, and speech recognition, their applications to three …

[图书][B] Persistence theory: from quiver representations to data analysis

SY Oudot - 2017 - books.google.com
Persistence theory emerged in the early 2000s as a new theory in the area of applied and
computational topology. This book provides a broad and modern view of the subject …

[图书][B] Computational topology: an introduction

H Edelsbrunner, JL Harer - 2022 - books.google.com
Combining concepts from topology and algorithms, this book delivers what its title promises:
an introduction to the field of computational topology. Starting with motivating problems in …

[图书][B] The structure and stability of persistence modules

F Chazal, V De Silva, M Glisse, S Oudot - 2016 - Springer
Our intention, at the beginning, was to write a short paper resolving some technical issues in
the theory of topological persistence. Specifically, we wished to present a clean easy-to-use …

Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening

Z Cang, L Mu, GW Wei - PLoS computational biology, 2018 - journals.plos.org
This work introduces a number of algebraic topology approaches, including multi-
component persistent homology, multi-level persistent homology, and electrostatic …

Integration of element specific persistent homology and machine learning for protein‐ligand binding affinity prediction

Z Cang, GW Wei - … journal for numerical methods in biomedical …, 2018 - Wiley Online Library
Protein‐ligand binding is a fundamental biological process that is paramount to many other
biological processes, such as signal transduction, metabolic pathways, enzyme …

Categorification of persistent homology

P Bubenik, JA Scott - Discrete & Computational Geometry, 2014 - Springer
We redevelop persistent homology (topological persistence) from a categorical point of view.
The main objects of study are (R,≦)-indexed diagrams in some target category. A set of …

Zigzag persistent homology and real-valued functions

G Carlsson, V De Silva, D Morozov - Proceedings of the twenty-fifth …, 2009 - dl.acm.org
We study the problem of computing zigzag persistence of a sequence of homology groups
and study a particular sequence derived from the levelsets of a real-valued function on a …

Metrics for generalized persistence modules

P Bubenik, V De Silva, J Scott - Foundations of Computational …, 2015 - Springer
We consider the question of defining interleaving metrics on generalized persistence
modules over arbitrary preordered sets. Our constructions are functorial, which implies a …