Mitochondrial DNA as a marker of molecular diversity: a reappraisal

N Galtier, B Nabholz, S Glémin, GDD Hurst - Molecular ecology, 2009 - Wiley Online Library
Over the last three decades, mitochondrial DNA has been the most popular marker of
molecular diversity, for a combination of technical ease‐of‐use considerations, and …

A review of long‐branch attraction

J Bergsten - Cladistics, 2005 - Wiley Online Library
The history of long‐branch attraction, and in particular methods suggested to detect and
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …

A simple and robust statistical test for detecting the presence of recombination

TC Bruen, H Philippe, D Bryant - Genetics, 2006 - academic.oup.com
Recombination is a powerful evolutionary force that merges historically distinct genotypes.
But the extent of recombination within many organisms is unknown, and even determining …

An exact nonparametric method for inferring mosaic structure in sequence triplets

MF Boni, D Posada, MW Feldman - Genetics, 2007 - academic.oup.com
Statistical tests for detecting mosaic structure or recombination among nucleotide
sequences usually rely on identifying a pattern or a signal that would be unlikely to appear …

The genomic basis of parasitism in the Strongyloides clade of nematodes

VL Hunt, IJ Tsai, A Coghlan, AJ Reid, N Holroyd… - Nature …, 2016 - nature.com
Soil-transmitted nematodes, including the Strongyloides genus, cause one of the most
prevalent neglected tropical diseases. Here we compare the genomes of four Strongyloides …

Evidence of selection upon genomic GC-content in bacteria

F Hildebrand, A Meyer, A Eyre-Walker - PLoS genetics, 2010 - journals.plos.org
The genomic GC-content of bacteria varies dramatically, from less than 20% to more than
70%. This variation is generally ascribed to differences in the pattern of mutation between …

Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference

D Rubinoff, BS Holland - Systematic biology, 2005 - academic.oup.com
Recently, the role of mitochondrial DNA (mtDNA) sequences in taxonomy and phylogenetic
inference has become contentious, and two extreme viewpoints have emerged, although, as …

A genomic perspective on the shortcomings of mitochondrial DNA for “barcoding” identification

D Rubinoff, S Cameron, K Will - Journal of heredity, 2006 - academic.oup.com
Approximately 600-bp sequences of mitochondrial DNA (mtDNA) have been designated as
“DNA barcodes” and have become one of the most contentious and animated issues in the …

Evolution and inheritance of animal mitochondrial DNA: rules and exceptions

ED Ladoukakis, E Zouros - Journal of Biological Research-Thessaloniki, 2017 - Springer
Mitochondrial DNA (mtDNA) has been studied intensely for “its own” merit. Its role for the
function of the cell and the organism remains a fertile field, its origin and evolution is an …

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

S Creer, VG Fonseca, DL Porazinska… - Molecular …, 2010 - Wiley Online Library
Biodiversity assessment is the key to understanding the relationship between biodiversity
and ecosystem functioning, but there is a well‐acknowledged biodiversity identification gap …