Targeting the gut and tumor microbiota in cancer

EM Park, M Chelvanambi, N Bhutiani, G Kroemer… - Nature medicine, 2022 - nature.com
Microorganisms within the gut and other niches may contribute to carcinogenesis, as well as
shaping cancer immunosurveillance and response to immunotherapy. Our understanding of …

Small molecule metabolites: discovery of biomarkers and therapeutic targets

S Qiu, Y Cai, H Yao, C Lin, Y Xie, S Tang… - Signal Transduction and …, 2023 - nature.com
Metabolic abnormalities lead to the dysfunction of metabolic pathways and metabolite
accumulation or deficiency which is well-recognized hallmarks of diseases. Metabolite …

MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data

Y Lu, G Zhou, J Ewald, Z Pang, T Shiri… - Nucleic Acids …, 2023 - academic.oup.com
Microbiome studies have become routine in biomedical, agricultural and environmental
sciences with diverse aims, including diversity profiling, functional characterization, and …

Mass spectrometry-based metabolomics in microbiome investigations

A Bauermeister, H Mannochio-Russo… - Nature Reviews …, 2022 - nature.com
Microbiotas are a malleable part of ecosystems, including the human ecosystem.
Microorganisms affect not only the chemistry of their specific niche, such as the human gut …

Linking plant secondary metabolites and plant microbiomes: a review

Z Pang, J Chen, T Wang, C Gao, Z Li, L Guo… - Frontiers in plant …, 2021 - frontiersin.org
Plant secondary metabolites (PSMs) play many roles including defense against pathogens,
pests, and herbivores; response to environmental stresses, and mediating organismal …

The integrative human microbiome project

HMP Integrative, LM Proctor, HH Creasy… - …, 2019 - ui.adsabs.harvard.edu
Abstract The NIH Human Microbiome Project (HMP) has been carried out over ten years and
two phases to provide resources, methods, and discoveries that link interactions between …

Recent advanced technologies for the characterization of xenobiotic-degrading microorganisms and microbial communities

S Mishra, Z Lin, S Pang, W Zhang, P Bhatt… - … in Bioengineering and …, 2021 - frontiersin.org
Global environmental contamination with a complex mixture of xenobiotics has become a
major environmental issue worldwide. Many xenobiotic compounds severely impact the …

gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota

V Pascal Andreu, HE Augustijn, L Chen… - Nature …, 2023 - nature.com
The gut microbiota produce hundreds of small molecules, many of which modulate host
physiology. Although efforts have been made to identify biosynthetic genes for secondary …

Adjunctive probiotics alleviates asthmatic symptoms via modulating the gut microbiome and serum metabolome

A Liu, T Ma, N Xu, H Jin, F Zhao, LY Kwok… - Microbiology …, 2021 - Am Soc Microbiol
Asthma is a multifactorial disorder, and microbial dysbiosis enhances lung inflammation and
asthma-related symptoms. Probiotics have shown anti-inflammatory effects and could …

MetOrigin: discriminating the origins of microbial metabolites for integrative analysis of the gut microbiome and metabolome

G Yu, C Xu, D Zhang, F Ju, Y Ni - IMeta, 2022 - Wiley Online Library
The interactions between the gut microbiome and metabolome play an important role in
human health and diseases. Current studies mainly apply statistical correlation analysis …