Role of RNA modifications in cancer

I Barbieri, T Kouzarides - Nature Reviews Cancer, 2020 - nature.com
Specific chemical modifications of biological molecules are an efficient way of regulating
molecular function, and a plethora of downstream signalling pathways are influenced by the …

tRNA dysregulation and disease

EA Orellana, E Siegal, RI Gregory - Nature Reviews Genetics, 2022 - nature.com
Abstract tRNAs are key adaptor molecules that decipher the genetic code during translation
of mRNAs in protein synthesis. In contrast to the traditional view of tRNAs as ubiquitously …

Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing

MC Lucas, LP Pryszcz, R Medina, I Milenkovic… - Nature …, 2024 - nature.com
Transfer RNAs (tRNAs) play a central role in protein translation. Studying them has been
difficult in part because a simple method to simultaneously quantify their abundance and …

METTL1-mediated m7G modification of Arg-TCT tRNA drives oncogenic transformation

EA Orellana, Q Liu, E Yankova, M Pirouz… - Molecular cell, 2021 - cell.com
The emerging" epitranscriptomics" field is providing insights into the biological and
pathological roles of different RNA modifications. The RNA methyltransferase METTL1 …

Codon optimality, bias and usage in translation and mRNA decay

G Hanson, J Coller - Nature reviews Molecular cell biology, 2018 - nature.com
The advent of ribosome profiling and other tools to probe mRNA translation has revealed
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …

The RNA modification landscape in human disease

N Jonkhout, J Tran, MA Smith, N Schonrock, JS Mattick… - Rna, 2017 - rnajournal.cshlp.org
RNA modifications have been historically considered as fine-tuning chemo-structural
features of infrastructural RNAs, such as rRNAs, tRNAs, and snoRNAs. This view has …

Synonymous but not silent: the codon usage code for gene expression and protein folding

Y Liu, Q Yang, F Zhao - Annual review of biochemistry, 2021 - annualreviews.org
Codon usage bias, the preference for certain synonymous codons, is found in all genomes.
Although synonymous mutations were previously thought to be silent, a large body of …

Cells alter their tRNA abundance to selectively regulate protein synthesis during stress conditions

M Torrent, G Chalancon, NS De Groot, A Wuster… - Science …, 2018 - science.org
Decoding the information in mRNA during protein synthesis relies on tRNA adaptors, the
abundance of which can affect the decoding rate and translation efficiency. To determine …

tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes

W Zhang, M Foo, AM Eren, T Pan - Molecular Cell, 2022 - cell.com
Summary tRNA is the most extensively modified RNA in cells. On average, a bacterial tRNA
contains 8 modifications per molecule and a eukaryotic tRNA contains 13 modifications per …

m3C32 tRNA modification controls serine codon-biased mRNA translation, cell cycle, and DNA-damage response

J Cui, E Sendinc, Q Liu, S Kim, JY Fang… - Nature …, 2024 - nature.com
The epitranscriptome includes a diversity of RNA modifications that influence gene
expression. N3-methylcytidine (m3C) mainly occurs in the anticodon loop (position C32) of …