Predicting protein function from sequence and structure

D Lee, O Redfern, C Orengo - Nature reviews molecular cell biology, 2007 - nature.com
While the number of sequenced genomes continues to grow, experimentally verified
functional annotation of whole genomes remains patchy. Structural genomics projects are …

Keep your fingers off my DNA: protein–protein interactions mediated by C2H2 zinc finger domains

KJ Brayer, DJ Segal - Cell biochemistry and biophysics, 2008 - Springer
Abstract Cys2-His2 (C2H2) zinc finger domains (ZFs) were originally identified as DNA-
binding domains, and uncharacterized domains are typically assumed to function in DNA …

The yak genome and adaptation to life at high altitude

Q Qiu, G Zhang, T Ma, W Qian, J Wang, Z Ye, C Cao… - Nature …, 2012 - nature.com
Domestic yaks (Bos grunniens) provide meat and other necessities for Tibetans living at
high altitude on the Qinghai-Tibetan Plateau and in adjacent regions. Comparison between …

High-throughput functional annotation and data mining with the Blast2GO suite

S Götz, JM García-Gómez, J Terol… - Nucleic acids …, 2008 - academic.oup.com
Functional genomics technologies have been widely adopted in the biological research of
both model and non-model species. An efficient functional annotation of DNA or protein …

InterPro: the integrative protein signature database

S Hunter, R Apweiler, TK Attwood… - Nucleic acids …, 2009 - academic.oup.com
Abstract The InterPro database (http://www. ebi. ac. uk/interpro/) integrates together
predictive models or 'signatures' representing protein domains, families and functional sites …

The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding

K Shirasawa, K Isuzugawa, M Ikenaga, Y Saito… - DNA …, 2017 - academic.oup.com
We determined the genome sequence of sweet cherry (Prunus avium) using next-
generation sequencing technology. The total length of the assembled sequences was 272.4 …

Protein structure homology modeling using SWISS-MODEL workspace

L Bordoli, F Kiefer, K Arnold, P Benkert, J Battey… - Nature protocols, 2009 - nature.com
Homology modeling aims to build three-dimensional protein structure models using
experimentally determined structures of related family members as templates. SWISS …

[HTML][HTML] Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

S Liu, ED Lorenzen, M Fumagalli, B Li, K Harris… - Cell, 2014 - cell.com
Polar bears are uniquely adapted to life in the High Arctic and have undergone drastic
physiological changes in response to Arctic climates and a hyperlipid diet of primarily …

A high quality draft consensus sequence of the genome of a heterozygous grapevine variety

R Velasco, A Zharkikh, M Troggio, DA Cartwright… - PloS one, 2007 - journals.plos.org
Background Worldwide, grapes and their derived products have a large market. The
cultivated grape species Vitis vinifera has potential to become a model for fruit trees …

Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin

PG Leiman, M Basler, UA Ramagopal… - Proceedings of the …, 2009 - National Acad Sciences
Protein secretion is a common property of pathogenic microbes. Gram-negative bacterial
pathogens use at least 6 distinct extracellular protein secretion systems to export proteins …