[HTML][HTML] Regulation and function of transposable elements in cancer genomes

M Lee Jr, SF Ahmad, J Xu - Cellular and Molecular Life Sciences, 2024 - Springer
Over half of human genomic DNA is composed of repetitive sequences generated
throughout evolution by prolific mobile genetic parasites called transposable elements …

[HTML][HTML] Taming transposable elements in livestock and poultry: a review of their roles and applications

P Zhao, C Peng, L Fang, Z Wang, GE Liu - Genetics Selection Evolution, 2023 - Springer
Livestock and poultry play a significant role in human nutrition by converting agricultural by-
products into high-quality proteins. To meet the growing demand for safe animal protein …

[HTML][HTML] Locus-level L1 DNA methylation profiling reveals the epigenetic and transcriptional interplay between L1s and their integration sites

S Lanciano, C Philippe, A Sarkar, D Pratella… - Cell Genomics, 2024 - cell.com
Summary Long interspersed element 1 (L1) retrotransposons are implicated in human
disease and evolution. Their global activity is repressed by DNA methylation, but …

[HTML][HTML] ZFP92, a KRAB domain zinc finger protein enriched in pancreatic islets, binds to B1/Alu SINE transposable elements and regulates retroelements and genes

AB Osipovich, KD Dudek, LT Trinh, LH Kim… - PLoS …, 2023 - journals.plos.org
Repressive KRAB domain-containing zinc-finger proteins (KRAB-ZFPs) are abundant in
mammalian genomes and contribute both to the silencing of transposable elements (TEs) …

[HTML][HTML] SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

EC Stow, M Baddoo, AJ LaRosa, D LaCoste… - Mobile DNA, 2022 - Springer
Background Endogenous expression of L1 mRNA is the first step in an L1-initiated
mutagenesis event. However, the contribution of individual cell types to patterns of organ …

[HTML][HTML] Recent bioinformatic progress to identify epigenetic changes associated to transposable elements

E Lerat - Frontiers in Genetics, 2022 - frontiersin.org
Transposable elements (TEs) are recognized for their great impact on the functioning and
evolution of their host genomes. They are associated to various deleterious effects, which …

[HTML][HTML] Genome graphs detect human polymorphisms in active epigenomic state during influenza infection

C Groza, X Chen, A Pacis, MM Simon, A Pramatarova… - Cell Genomics, 2023 - cell.com
Genetic variants, including mobile element insertions (MEIs), are known to impact the
epigenome. We hypothesized that genome graphs, which encapsulate genetic diversity …

LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq

W McKerrow, L Kagermazova, N Doudican… - Nucleic acids …, 2023 - academic.oup.com
LINE-1 retrotransposons are sequences capable of copying themselves to new genomic loci
via an RNA intermediate. New studies implicate LINE-1 in a range of diseases, especially in …

[HTML][HTML] Large Deletions, Cleavage of the Telomeric Repeat Sequence, and Reverse Transcriptase-Mediated DNA Damage Response Associated with Long …

KJ Kines, M Sokolowski, C DeFreece, A Shareef… - Genes, 2024 - mdpi.com
L1 elements can cause DNA damage and genomic variation via retrotransposition and the
generation of endonuclease-dependent DNA breaks. These processes require L1 ORF2p …

Comprehensive locus-specific L1 DNA methylation profiling reveals the epigenetic and transcriptional interplay between L1s and their integration sites

S Lanciano, C Philippe, A Sarkar, D Pratella… - bioRxiv, 2023 - biorxiv.org
SUMMARY Long interspersed element-1 (L1) retrotransposons play important roles in
human disease and evolution. Their global activity is repressed by DNA methylation, but …