QSAR without borders

EN Muratov, J Bajorath, RP Sheridan… - Chemical Society …, 2020 - pubs.rsc.org
Prediction of chemical bioactivity and physical properties has been one of the most
important applications of statistical and more recently, machine learning and artificial …

Machine learning approaches and databases for prediction of drug–target interaction: a survey paper

M Bagherian, E Sabeti, K Wang… - Briefings in …, 2021 - academic.oup.com
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …

A unified drug–target interaction prediction framework based on knowledge graph and recommendation system

Q Ye, CY Hsieh, Z Yang, Y Kang, J Chen, D Cao… - Nature …, 2021 - nature.com
Prediction of drug-target interactions (DTI) plays a vital role in drug development in various
areas, such as virtual screening, drug repurposing and identification of potential drug side …

Enhancing activity prediction models in drug discovery with the ability to understand human language

P Seidl, A Vall, S Hochreiter… - … on Machine Learning, 2023 - proceedings.mlr.press
Activity and property prediction models are the central workhorses in drug discovery and
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

AS Rifaioglu, H Atas, MJ Martin… - Briefings in …, 2019 - academic.oup.com
The identification of interactions between drugs/compounds and their targets is crucial for
the development of new drugs. In vitro screening experiments (ie bioassays) are frequently …

Deep learning in virtual screening: recent applications and developments

TB Kimber, Y Chen, A Volkamer - International journal of molecular …, 2021 - mdpi.com
Drug discovery is a cost and time-intensive process that is often assisted by computational
methods, such as virtual screening, to speed up and guide the design of new compounds …

Deep learning for drug design: an artificial intelligence paradigm for drug discovery in the big data era

Y Jing, Y Bian, Z Hu, L Wang, XQS Xie - The AAPS journal, 2018 - Springer
Over the last decade, deep learning (DL) methods have been extremely successful and
widely used to develop artificial intelligence (AI) in almost every domain, especially after it …

Beyond the hype: deep neural networks outperform established methods using a ChEMBL bioactivity benchmark set

EB Lenselink, N Ten Dijke, B Bongers… - Journal of …, 2017 - Springer
The increase of publicly available bioactivity data in recent years has fueled and catalyzed
research in chemogenomics, data mining, and modeling approaches. As a direct result, over …

Virtual screening strategies in drug discovery: a critical review

A Lavecchia, C Di Giovanni - Current medicinal chemistry, 2013 - ingentaconnect.com
Virtual screening (VS) is a powerful technique for identifying hit molecules as starting points
for medicinal chemistry. The number of methods and softwares which use the ligand and …

ChemDes: an integrated web-based platform for molecular descriptor and fingerprint computation

J Dong, DS Cao, HY Miao, S Liu, BC Deng… - Journal of …, 2015 - Springer
Background Molecular descriptors and fingerprints have been routinely used in QSAR/SAR
analysis, virtual drug screening, compound search/ranking, drug ADME/T prediction and …