CpG and non-CpG methylation in epigenetic gene regulation and brain function

HS Jang, WJ Shin, JE Lee, JT Do - Genes, 2017 - mdpi.com
DNA methylation is a major epigenetic mark with important roles in genetic regulation.
Methylated cytosines are found primarily at CpG dinucleotides, but are also found at non …

DNA methylation methods: Global DNA methylation and methylomic analyses

S Li, TO Tollefsbol - Methods, 2021 - Elsevier
DNA methylation provides a pivotal layer of epigenetic regulation in eukaryotes that has
significant involvement for numerous biological processes in health and disease. The …

Breakage of cytoplasmic chromosomes by pathological DNA base excision repair

S Tang, E Stokasimov, Y Cui, D Pellman - Nature, 2022 - nature.com
Chromothripsis is a catastrophic mutational process that promotes tumorigenesis and
causes congenital disease,,–. Chromothripsis originates from aberrations of nuclei called …

[HTML][HTML] DNA demethylation dynamics

N Bhutani, DM Burns, HM Blau - Cell, 2011 - cell.com
The discovery of cytosine hydroxymethylation (5hmC) suggested a simple means of
demethylating DNA and activating genes. Further experiments, however, unearthed an …

Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation

H Wu, Y Zhang - Genes & development, 2011 - genesdev.cshlp.org
Ten-eleven translocation 1–3 (Tet1–3) proteins have recently been discovered in
mammalian cells to be members of a family of DNA hydroxylases that possess enzymatic …

Advanced cell culture techniques for cancer drug discovery

CJ Lovitt, TB Shelper, VM Avery - Biology, 2014 - mdpi.com
Human cancer cell lines are an integral part of drug discovery practices. However, modeling
the complexity of cancer utilizing these cell lines on standard plastic substrata, does not …

Tet family proteins and 5-hydroxymethylcytosine in development and disease

L Tan, YG Shi - Development, 2012 - journals.biologists.com
Over the past few decades, DNA methylation at the 5-position of cytosine (5-methylcytosine,
5mC) has emerged as an important epigenetic modification that plays essential roles in …

[HTML][HTML] Global 5-hydroxymethylcytosine content is significantly reduced in tissue stem/progenitor cell compartments and in human cancers

MC Haffner, A Chaux, AK Meeker, DM Esopi, J Gerber… - Oncotarget, 2011 - ncbi.nlm.nih.gov
DNA methylation at the 5-position of cytosines (5mC) represents an important epigenetic
modification involved in tissue differentiation and is frequently altered in cancer. Recent …

The developmental control of transposable elements and the evolution of higher species

M Friedli, D Trono - Annual review of cell and developmental …, 2015 - annualreviews.org
Transposable elements (TEs) account for at least 50% of the human genome. They
constitute essential motors of evolution through their ability to modify genomic architecture …

TET proteins and the control of cytosine demethylation in cancer

L Scourzic, E Mouly, OA Bernard - Genome medicine, 2015 - Springer
The discovery that ten-eleven translocation (TET) proteins are α-ketoglutarate-dependent
dioxygenases involved in the conversion of 5-methylcytosines (5-mC) to 5 …