Life and death in the soil microbiome: how ecological processes influence biogeochemistry

NW Sokol, E Slessarev, GL Marschmann… - Nature Reviews …, 2022 - nature.com
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …

A practical guide to amplicon and metagenomic analysis of microbiome data

YX Liu, Y Qin, T Chen, M Lu, X Qian, X Guo… - Protein & cell, 2021 - academic.oup.com
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …

Microbiome definition re-visited: old concepts and new challenges

G Berg, D Rybakova, D Fischer, T Cernava… - Microbiome, 2020 - Springer
The field of microbiome research has evolved rapidly over the past few decades and has
become a topic of great scientific and public interest. As a result of this rapid growth in …

Quantitative assessment of microbial necromass contribution to soil organic matter

C Liang, W Amelung, J Lehmann… - Global change …, 2019 - Wiley Online Library
Soil carbon transformation and sequestration have received significant interest in recent
years due to a growing need for quantitating its role in mitigating climate change. Even …

Structure and function of the global topsoil microbiome

M Bahram, F Hildebrand, SK Forslund, JL Anderson… - Nature, 2018 - nature.com
Soils harbour some of the most diverse microbiomes on Earth and are essential for both
nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model …

Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

L Hu, CAM Robert, S Cadot, XI Zhang, M Ye… - Nature …, 2018 - nature.com
By changing soil properties, plants can modify their growth environment. Although the soil
microbiota is known to play a key role in the resulting plant-soil feedbacks, the proximal …

Best practices for analysing microbiomes

R Knight, A Vrbanac, BC Taylor, A Aksenov… - Nature Reviews …, 2018 - nature.com
Complex microbial communities shape the dynamics of various environments, ranging from
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …

Microbial extracellular polymeric substances: ecological function and impact on soil aggregation

OYA Costa, JM Raaijmakers, EE Kuramae - Frontiers in microbiology, 2018 - frontiersin.org
A wide range of microorganisms produce extracellular polymeric substances (EPS), highly
hydrated polymers that are mainly composed of polysaccharides, proteins, and DNA. EPS …

Life in dry soils: effects of drought on soil microbial communities and processes

JP Schimel - Annual review of ecology, evolution, and …, 2018 - annualreviews.org
Throughout Earth's history, drought has been a common crisis in terrestrial ecosystems; in
human societies, it can cause famine, one of the Four Horsemen of the apocalypse. As the …