A guide to artificial intelligence for cancer researchers

R Perez-Lopez, N Ghaffari Laleh, F Mahmood… - Nature Reviews …, 2024 - nature.com
Artificial intelligence (AI) has been commoditized. It has evolved from a specialty resource to
a readily accessible tool for cancer researchers. AI-based tools can boost research …

Developing image analysis methods for digital pathology

P Bankhead - The Journal of pathology, 2022 - Wiley Online Library
The potential to use quantitative image analysis and artificial intelligence is one of the
driving forces behind digital pathology. However, despite novel image analysis methods for …

Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology

OL Saldanha, CML Loeffler, JM Niehues… - NPJ Precision …, 2023 - nature.com
The histopathological phenotype of tumors reflects the underlying genetic makeup. Deep
learning can predict genetic alterations from pathology slides, but it is unclear how well …

[HTML][HTML] Deep learning in computational dermatopathology of melanoma: A technical systematic literature review

D Sauter, G Lodde, F Nensa, D Schadendorf… - Computers in biology …, 2023 - Elsevier
Deep learning (DL) has become one of the major approaches in computational
dermatopathology, evidenced by a significant increase in this topic in the current literature …

AI in computational pathology of cancer: improving diagnostic workflows and clinical outcomes?

D Cifci, GP Veldhuizen, S Foersch… - Annual Review of …, 2023 - annualreviews.org
Histopathology plays a fundamental role in the diagnosis and subtyping of solid tumors and
has become a cornerstone of modern precision oncology. Histopathological evaluation is …

A systematic pan-cancer study on deep learning-based prediction of multi-omic biomarkers from routine pathology images

S Arslan, J Schmidt, C Bass, D Mehrotra… - Communications …, 2024 - nature.com
Background The objective of this comprehensive pan-cancer study is to evaluate the
potential of deep learning (DL) for molecular profiling of multi-omic biomarkers directly from …

Open-source curation of a pancreatic ductal adenocarcinoma gene expression analysis platform (pdacR) supports a two-subtype model

LA Torre-Healy, RR Kawalerski, K Oh… - Communications …, 2023 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) is an aggressive disease for which potent
therapies have limited efficacy. Several studies have described the transcriptomic landscape …

Review of Molecular Technologies for Investigating Canine Cancer

A Kehl, H Aupperle-Lellbach, S de Brot… - Animals, 2024 - mdpi.com
Simple Summary Genetic molecular testing is starting to become part of standard clinical
practice for dogs with cancer as it can assist veterinarians with diagnosis, provide …

Multi-scale feature fusion for prediction of IDH1 mutations in glioma histopathological images

X Liu, W Hu, S Diao, DE Abera, D Racoceanu… - Computer Methods and …, 2024 - Elsevier
Background and objective Mutations in isocitrate dehydrogenase 1 (IDH1) play a crucial role
in the prognosis, diagnosis, and treatment of gliomas. However, current methods for …

Which data subset should be augmented for deep learning? a simulation study using urothelial cell carcinoma histopathology images

YA Ameen, DM Badary, AEI Abonnoor, KF Hussain… - BMC …, 2023 - Springer
Background Applying deep learning to digital histopathology is hindered by the scarcity of
manually annotated datasets. While data augmentation can ameliorate this obstacle, its …