The spatial organization of transcriptional control

A Hafner, A Boettiger - Nature Reviews Genetics, 2023 - nature.com
In animals, the sequences for controlling gene expression do not concentrate just at the
transcription start site of genes, but are frequently thousands to millions of base pairs distal …

The evolution of gene expression in cis and trans

SA Signor, SV Nuzhdin - Trends in Genetics, 2018 - cell.com
There is abundant variation in gene expression between individuals, populations, and
species. The evolution of gene regulation and expression within and between species is …

Dynamic interplay between enhancer–promoter topology and gene activity

H Chen, M Levo, L Barinov, M Fujioka, JB Jaynes… - Nature …, 2018 - nature.com
A long-standing question in gene regulation is how remote enhancers communicate with
their target promoters, and specifically how chromatin topology dynamically relates to gene …

Chromosome-level organization of the regulatory genome in the Drosophila nervous system

G Mohana, J Dorier, X Li, M Mouginot, RC Smith… - Cell, 2023 - cell.com
Previous studies have identified topologically associating domains (TADs) as basic units of
genome organization. We present evidence of a previously unreported level of genome …

Functional coordination between transcription factor clustering and gene activity

K Kawasaki, T Fukaya - Molecular Cell, 2023 - cell.com
The prevailing view of metazoan gene regulation is that transcription is facilitated through
the formation of static activator complexes at distal regulatory regions. Here, we employed …

[图书][B] Genomes 5

TA Brown - 2023 - taylorfrancis.com
Genomes 5 has been completely revised and updated. It is a thoroughly modern textbook
about genomes and how they are investigated. As with previous Genomes editions …

Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome

DB Brückner, H Chen, L Barinov, B Zoller, T Gregor - Science, 2023 - science.org
Chromosomes in the eukaryotic nucleus are highly compacted. However, for many
functional processes, including transcription initiation, the pairwise motion of distal …

Visualization of transvection in living Drosophila embryos

B Lim, T Heist, M Levine, T Fukaya - Molecular cell, 2018 - cell.com
How remote enhancers interact with appropriate target genes persists as a central mystery
in gene regulation. Here, we exploit the properties of transvection to explore enhancer …

[HTML][HTML] Advances in chromatin imaging at kilobase-scale resolution

A Boettiger, S Murphy - Trends in Genetics, 2020 - cell.com
It is now widely appreciated that the spatial organization of the genome is nonrandom, and
its complex 3D folding has important consequences for many genome processes. Recent …

Interleukin-2 improves amyloid pathology, synaptic failure and memory in Alzheimer's disease mice

S Alves, G Churlaud, M Audrain… - Brain, 2017 - academic.oup.com
Abstract Interleukin-2 (IL-2)-deficient mice have cytoarchitectural hippocampal modifications
and impaired learning and memory ability reminiscent of Alzheimer's disease. IL-2 …