A renaissance for the pioneering 16S rRNA gene
SG Tringe, P Hugenholtz - Current opinion in microbiology, 2008 - Elsevier
Culture-independent molecular surveys using the 16S rRNA gene have become a mainstay
for characterizing microbial community structure over the past quarter century. More recently …
for characterizing microbial community structure over the past quarter century. More recently …
Current opportunities and challenges in microbial metagenome analysis—a bioinformatic perspective
H Teeling, FO Glöckner - Briefings in bioinformatics, 2012 - academic.oup.com
Metagenomics has become an indispensable tool for studying the diversity and metabolic
potential of environmental microbes, whose bulk is as yet non-cultivable. Continual progress …
potential of environmental microbes, whose bulk is as yet non-cultivable. Continual progress …
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
Phytoplankton blooms characterize temperate ocean margin zones in spring. We
investigated the bacterioplankton response to a diatom bloom in the North Sea and …
investigated the bacterioplankton response to a diatom bloom in the North Sea and …
Competitive and cooperative metabolic interactions in bacterial communities
Revealing the ecological principles that shape communities is a major challenge of the post-
genomic era. To date, a systematic approach for describing inter-species interactions has …
genomic era. To date, a systematic approach for describing inter-species interactions has …
The environment ontology: contextualising biological and biomedical entities
As biological and biomedical research increasingly reference the environmental context of
the biological entities under study, the need for formalisation and standardisation of …
the biological entities under study, the need for formalisation and standardisation of …
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
K Liolios, IMA Chen, K Mavromatis… - Nucleic acids …, 2010 - academic.oup.com
The G enomes O n L ine D atabase (GOLD) is a comprehensive resource for centralized
monitoring of genome and metagenome projects worldwide. Both complete and ongoing …
monitoring of genome and metagenome projects worldwide. Both complete and ongoing …
The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010
This report details the outcome the first meeting of the Earth Microbiome Project to discuss
sample selection and acquisition. The meeting, held at the Argonne National Laboratory on …
sample selection and acquisition. The meeting, held at the Argonne National Laboratory on …
Accelerating the digitization of biodiversity research specimens through online public participation
A goal of the biodiversity research community is to digitize the majority of the one billion
specimens in US collections by 2020. Meeting this ambitious goal requires increased …
specimens in US collections by 2020. Meeting this ambitious goal requires increased …
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
High-throughput sequencing of 16S rRNA genes has increased our understanding of
microbial community structure, but now even higher-throughput methods to the Illumina …
microbial community structure, but now even higher-throughput methods to the Illumina …
Advancing the microbiome research community
The human microbiome has become a recognized factor in promoting and maintaining
health. We outline opportunities in interdisciplinary research, analytical rigor …
health. We outline opportunities in interdisciplinary research, analytical rigor …