Textual data compression in computational biology: a synopsis

R Giancarlo, D Scaturro, F Utro - Bioinformatics, 2009 - academic.oup.com
Motivation: Textual data compression, and the associated techniques coming from
information theory, are often perceived as being of interest for data communication and …

From 1/f noise to multifractal cascades in heartbeat dynamics

PC Ivanov, LA Nunes Amaral, AL Goldberger… - … Journal of Nonlinear …, 2001 - pubs.aip.org
In recent years the study of the statistical properties of heartbeat interval sequences has
attracted the attention of researchers from different fields. 18–22 Analysis has focused …

From DNA to protein: Why genetic code context of nucleotides for DNA signal processing? A review

M Ahmad, LT Jung, AA Bhuiyan - Biomedical Signal Processing and …, 2017 - Elsevier
Protein coding regions are commonly diffused with non-coding regions due to 1/f
background noise in such a way that a viable discernment between the two regions …

Analysis of symbolic sequences using the Jensen-Shannon divergence

I Grosse, P Bernaola-Galván, P Carpena… - Physical Review E, 2002 - APS
We study statistical properties of the Jensen-Shannon divergence D, which quantifies the
difference between probability distributions, and which has been widely applied to analyses …

Spectral entropies as information-theoretic tools for complex network comparison

M De Domenico, J Biamonte - Physical Review X, 2016 - APS
Any physical system can be viewed from the perspective that information is implicitly
represented in its state. However, the quantification of this information when it comes to …

Shannon information entropy in the presence of magnetic and Aharanov–Bohm (AB) fields

CO Edet, AN Ikot - The European Physical Journal Plus, 2021 - Springer
In this research article, quantum information-theoretic analysis of the class of Yukawa
potential (CYP) has been considered in the presence of magnetic and Aharanov–Bohm (AB) …

Autoregressive modeling and feature analysis of DNA sequences

N Chakravarthy, A Spanias, LD Iasemidis… - EURASIP Journal on …, 2004 - Springer
A parametric signal processing approach for DNA sequence analysis based on
autoregressive (AR) modeling is presented. AR model residual errors and AR model …

Survey on encoding schemes for genomic data representation and feature learning—from signal processing to machine learning

N Yu, Z Li, Z Yu - Big Data Mining and Analytics, 2018 - ieeexplore.ieee.org
Data-driven machine learning, especially deep learning technology, is becoming an
important tool for handling big data issues in bioinformatics. In machine learning, DNA …

Splice site prediction with quadratic discriminant analysis using diversity measure

L Zhang, L Luo - Nucleic acids research, 2003 - academic.oup.com
Based on the conservation of nucleotides at splicing sites and the features of base
composition and base correlation around these sites we use the method of increment of …

Multiscale aspects of cardiac control

PC Ivanov, Z Chen, K Hu, HE Stanley - Physica A: Statistical Mechanics …, 2004 - Elsevier
We report some recent attempts to understand the dynamics of complex physiologic
fluctuations by adapting and extending concepts and methods developed very recently in …