Online dashboards for SARS-CoV-2 wastewater-based epidemiology

D Focosi, PG Spezia, F Maggi - Future Microbiology, 2024 - Taylor & Francis
Aim: Wastewater-based epidemiology (WBE) is increasingly used to monitor pandemics. In
this manuscript, we review methods and limitations of WBE, as well as their online …

Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data

SG Sutcliffe, SA Kraemer, I Ellmen… - Microbial …, 2024 - microbiologyresearch.org
Wastewater-based surveillance (WBS) is an important epidemiological and public health
tool for tracking pathogens across the scale of a building, neighbourhood, city, or region …

[HTML][HTML] Combining Short-and Long-Read Sequencing Technologies to Identify SARS-CoV-2 Variants in Wastewater

G Jayme, JL Liu, JH Galvez, SJ Reiling, S Celikkol… - Viruses, 2024 - mdpi.com
During the COVID-19 pandemic, the monitoring of SARS-CoV-2 RNA in wastewater was
used to track the evolution and emergence of variant lineages and gauge infection levels in …

Emergence and spread of SARS-CoV-2 variants of concern in Canada: a retrospective analysis from clinical and wastewater data

D Champredon, D Becker, SW Peterson, E Mejia… - BMC Infectious …, 2024 - Springer
Background The spread of SARS-CoV-2 has been studied at unprecedented levels
worldwide. In jurisdictions where molecular analysis was performed on large scales, the …

Natural evolution of SARS-CoV-2 variants in K18-ACE2 mice gives rise to more virulent virus and variant alleles associated with treatment resistance

JD Sunday Willett, A Gravel, I Dubuc, L Gudimard… - bioRxiv, 2023 - biorxiv.org
Background The continuing COVID-19 pandemic is partially due to viral evolution
decreasing vaccine and treatment efficacies. Predicting viral evolution is difficult. Others …

[HTML][HTML] SARS-CoV-2 evolution in the absence of selective immune pressures, results in antibody resistance, interferon suppression and phenotypic differences by …

JDS Willett, A Gravel, I Dubuc, L Gudimard… - 2023 - europepmc.org
The persistence of COVID-19 is partly due to viral evolution reducing vaccine and treatment
efficacy. Serial infections of Wuhan-like SARS-CoV-2 in Balb/c mice yielded mouse-adapted …