Humanized yeast to model human biology, disease and evolution

AH Kachroo, M Vandeloo, BM Greco… - Disease models & …, 2022 - journals.biologists.com
For decades, budding yeast, a single-cellular eukaryote, has provided remarkable insights
into human biology. Yeast and humans share several thousand genes despite …

Advances and applications in the quest for orthologs

N Glover, C Dessimoz, I Ebersberger… - Molecular biology …, 2019 - academic.oup.com
Gene families evolve by the processes of speciation (creating orthologs), gene duplication
(paralogs), and horizontal gene transfer (xenologs), in addition to sequence divergence and …

Cleave and Rescue, a novel selfish genetic element and general strategy for gene drive

G Oberhofer, T Ivy, BA Hay - Proceedings of the National …, 2019 - National Acad Sciences
There is great interest in being able to spread beneficial traits throughout wild populations in
ways that are self-sustaining. Here, we describe a chromosomal selfish genetic element …

Full humanization of the glycolytic pathway in Saccharomyces cerevisiae

FJ Boonekamp, E Knibbe, MA Vieira-Lara, M Wijsman… - Cell Reports, 2022 - cell.com
Although transplantation of single genes in yeast plays a key role in elucidating gene
functionality in metazoans, technical challenges hamper humanization of full pathways and …

The convoluted history of haem biosynthesis

L Kořený, M Oborník, E Horáková, RF Waller… - Biological …, 2022 - Wiley Online Library
The capacity of haem to transfer electrons, bind diatomic gases, and catalyse various
biochemical reactions makes it one of the essential biomolecules on Earth and one that was …

Systematically testing human HMBS missense variants to reveal mechanism and pathogenic variation

W van Loggerenberg, S Sowlati-Hashjin, J Weile… - The American Journal of …, 2023 - cell.com
Defects in hydroxymethylbilane synthase (HMBS) can cause acute intermittent porphyria
(AIP), an acute neurological disease. Although sequencing-based diagnosis can be …

Apoptotic factors are evolutionarily conserved since mitochondrial domestication

V Kaushal, J Klim, A Skoneczna… - Genome Biology and …, 2023 - academic.oup.com
The mechanisms initiating apoptotic programmed cell death in diverse eukaryotes are very
similar. Basically, the mitochondrial permeability transition activates apoptotic proteases …

Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs

JM Laurent, RK Garge, AI Teufel, CO Wilke… - PLoS …, 2020 - journals.plos.org
Despite over a billion years of evolutionary divergence, several thousand human genes
possess clearly identifiable orthologs in yeast, and many have undergone lineage-specific …

[HTML][HTML] InParanoiDB 9: ortholog groups for protein domains and full-length proteins

E Persson, ELL Sonnhammer - Journal of Molecular Biology, 2023 - Elsevier
Prediction of orthologs is an important bioinformatics pursuit that is frequently used for
inferring protein function and evolutionary analyses. The InParanoid database is a well …

The Quest for Orthologs benchmark service and consensus calls in 2020

AM Altenhoff, J Garrayo-Ventas… - Nucleic acids …, 2020 - academic.oup.com
The identification of orthologs—genes in different species which descended from the same
gene in their last common ancestor—is a prerequisite for many analyses in comparative …