Proteomic definitions of basement membrane composition in health and disease

MJ Randles, MJ Humphries, R Lennon - Matrix biology, 2017 - Elsevier
Basement membranes are formed from condensed networks of extracellular matrix (ECM)
proteins. These structures underlie all epithelial, mesothelial and endothelial sheets and …

Thermal proteome profiling for unbiased identification of direct and indirect drug targets using multiplexed quantitative mass spectrometry

H Franken, T Mathieson, D Childs, GMA Sweetman… - Nature protocols, 2015 - nature.com
The direct detection of drug-protein interactions in living cells is a major challenge in drug
discovery research. Recently, we introduced an approach termed thermal proteome profiling …

[HTML][HTML] Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective

Y Perez-Riverol, R Wang, H Hermjakob… - … et Biophysica Acta (BBA …, 2014 - Elsevier
Data processing, management and visualization are central and critical components of a
state of the art high-throughput mass spectrometry (MS)-based proteomics experiment, and …

The power of human protective modifiers: PLS3 and CORO1C unravel impaired endocytosis in spinal muscular atrophy and rescue SMA phenotype

S Hosseinibarkooie, M Peters, L Torres-Benito… - The American Journal of …, 2016 - cell.com
Homozygous loss of SMN1 causes spinal muscular atrophy (SMA), the most common and
devastating childhood genetic motor-neuron disease. The copy gene SMN2 produces …

TP53-inducible putative long noncoding RNAs encode functional polypeptides that suppress cell proliferation

W Xu, C Liu, B Deng, P Lin, Z Sun, A Liu… - Genome …, 2022 - genome.cshlp.org
Polypeptides encoded by long noncoding RNAs (lncRNAs) are a novel class of functional
molecules. However, whether these hidden polypeptides participate in the TP53 pathway …

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the …

RG Côté, J Griss, JA Dianes, R Wang, JC Wright… - Molecular & Cellular …, 2012 - ASBMB
The original PRIDE Converter tool greatly simplified the process of submitting mass
spectrometry (MS)-based proteomics data to the PRIDE database. However, after much user …

Plastin 3 influences bone homeostasis through regulation of osteoclast activity

J Neugebauer, J Heilig… - Human molecular …, 2018 - academic.oup.com
Over 200 million people suffer from osteoporosis worldwide, one third of which will develop
osteoporotic bone fractures. Unfortunately, no effective cure exists. Mutations in plastin 3 …

Enhanced inflammation and suppressed adaptive immunity in COVID-19 with prolonged RNA shedding

X Tang, R Sun, W Ge, T Mao, L Qian, C Huang, Z Kang… - Cell Discovery, 2022 - nature.com
Little is known regarding why a subset of COVID-19 patients exhibited prolonged positivity of
SARS-CoV-2 infection. Here, we found that patients with long viral RNA course (LC) …

Analysis of the molecular basis of fruit cracking susceptibility in Litchi chinensis cv. Baitangying by transcriptome and quantitative proteome profiling

J Wang, X Gao, Z Ma, J Chen, Y Liu - Journal of plant physiology, 2019 - Elsevier
Fruit cracking is a serious problem in Litchi chinensis cv. Baitangying orchards, but few
advances have been made in understanding the molecular basis of cracking susceptibility …

Isolation and proteomic characterization of the mouse sperm acrosomal matrix

B Guyonnet, M Zabet-Moghaddam… - Molecular & Cellular …, 2012 - ASBMB
A critical step during fertilization is the sperm acrosome reaction in which the acrosome
releases its contents allowing the spermatozoa to penetrate the egg investments. The sperm …