Quantitative mass spectrometry-based proteomics: an overview

S Rozanova, K Barkovits, M Nikolov, C Schmidt… - Quantitative methods in …, 2021 - Springer
In recent decades, mass spectrometry has moved more than ever before into the front line of
protein-centered research. After being established at the qualitative level, the more …

Relative and absolute quantitation in mass spectrometry–based proteomics

JA Ankney, A Muneer, X Chen - Annual review of analytical …, 2018 - annualreviews.org
Mass spectrometry–based quantitative proteomics is a powerful tool for gaining insights into
function and dynamics of biological systems. However, peptides with different sequences …

An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion

F Sabbadin, GR Hemsworth, L Ciano… - Nature …, 2018 - nature.com
Thermobia domestica belongs to an ancient group of insects and has a remarkable ability to
digest crystalline cellulose without microbial assistance. By investigating the digestive …

ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies

J Tang, J Fu, Y Wang, B Li, Y Li, Q Yang… - Briefings in …, 2020 - academic.oup.com
Label-free quantification (LFQ) with a specific and sequentially integrated workflow of
acquisition technique, quantification tool and processing method has emerged as the …

The CD98 heavy chain is a marker and regulator of head and neck squamous cell carcinoma radiosensitivity

D Digomann, I Kurth, A Tyutyunnykova, O Chen… - Clinical Cancer …, 2019 - AACR
Purpose: The heavy chain of the CD98 protein (CD98hc) is encoded by the SLC3A2 gene.
Together with the light subunit LAT1, CD98hc constitutes a heterodimeric transmembrane …

Proteomic analysis of nasal mucus samples of healthy patients and patients with chronic rhinosinusitis

SST Kao, A Bassiouni, M Ramezanpour… - Journal of Allergy and …, 2021 - Elsevier
Background Chronic rhinosinusitis (CRS) has a complex and multifactorial pathogenesis
with a heterogeneous inflammatory profile. Proteomic analysis of nasal mucus may enable …

iTRAQ and RNA-Seq Analyses Provide New Insights into Regulation Mechanism of Symbiotic Germination of Dendrobium officinale Seeds (Orchidaceae)

J Chen, SS Liu, A Kohler, B Yan, HM Luo… - Journal of proteome …, 2017 - ACS Publications
Mycorrhizal fungi colonize orchid seeds and induce germination. This so-called symbiotic
germination is a critical developmental process in the lifecycle of all orchid species …

Unraveling subcellular and ultrastructural changes during vitrification of human spermatozoa: Effect of a mitochondria-targeted antioxidant and a permeable …

P Kumar, M Wang, E Isachenko, G Rahimi… - Frontiers in Cell and …, 2021 - frontiersin.org
Mitochondria-targeted antioxidants have great potential to counterbalance the generated
reactive oxygen species (ROS) because they cross the inner membrane of the mitochondria …

Real-time iTRAQ-based proteome profiling revealed the central metabolism involved in nitrogen starvation induced lipid accumulation in microalgae

V Rai, M Muthuraj, MN Gandhi, D Das, S Srivastava - Scientific reports, 2017 - nature.com
To understand the post-transcriptional molecular mechanisms attributing to oleaginousness
in microalgae challenged with nitrogen starvation (N-starvation), the longitudinal proteome …

Mass spectrometry based proteomics as foodomics tool in research and assurance of food quality and safety

U Andjelković, D Josić - Trends in Food Science & Technology, 2018 - Elsevier
Background As a comprehensive discipline that studies food and nutrition, foodomics
requires reliable qualitative and quantitative information about the food proteome …