Multiscale computing for science and engineering in the era of exascale performance

AG Hoekstra, B Chopard, D Coster… - … of the Royal …, 2019 - royalsocietypublishing.org
In this position paper, we discuss two relevant topics:(i) generic multiscale computing on
emerging exascale high-performing computing environments, and (ii) the scaling of such …

[HTML][HTML] Multiscale computing in the exascale era

S Alowayyed, D Groen, PV Coveney… - Journal of Computational …, 2017 - Elsevier
We expect that multiscale simulations will be one of the main high performance computing
workloads in the exascale era. We propose multiscale computing patterns as a generic …

[HTML][HTML] Navigating multi-scale cancer systems biology towards model-driven clinical oncology and its applications in personalized therapeutics

MN Gondal, SU Chaudhary - Frontiers in Oncology, 2021 - frontiersin.org
Rapid advancements in high-throughput omics technologies and experimental protocols
have led to the generation of vast amounts of scale-specific biomolecular data on cancer …

Clinical trial data management software: a review of the technical features

A Nourani, H Ayatollahi… - Reviews on recent clinical …, 2019 - ingentaconnect.com
Background: Data management is an important, complex and multidimensional process in
clinical trials. The execution of this process is very difficult and expensive without the use of …

Cloud computing infrastructure for the VPH community

P Nowakowski, M Bubak, T Bartyński, T Gubała… - Journal of computational …, 2018 - Elsevier
As virtualization technologies mature and become ever more widespread, cloud computing
has emerged as a promising paradigm for e-science. In order to facilitate successful …

Clinically driven design of multi-scale cancer models: the ContraCancrum project paradigm

K Marias, D Dionysiou, V Sakkalis, N Graf… - Interface …, 2011 - royalsocietypublishing.org
The challenge of modelling cancer presents a major opportunity to improve our ability to
reduce mortality from malignant neoplasms, improve treatments and meet the demands …

Sequence of decisions on discrete event systems modeled by Petri nets with structural alternative configurations

JI Latorre-Biel, E Jiménez-Macías… - Journal of Computational …, 2014 - Elsevier
The management of certain systems, such as manufacturing facilities, supply chains, or
communication networks implies assessing the consequences of decisions, aimed for the …

From base pair to bedside: molecular simulation and the translation of genomics to personalized medicine

DW Wright, S Wan, N Shublaq… - … Systems Biology and …, 2012 - Wiley Online Library
Despite the promises made that genomic sequencing would transform therapy by
introducing a new era of personalized medicine, relatively few tangible breakthroughs have …

Towards infrastructure for knowledge-based decision support in clinical practice

II Syomov, EV Bologva, SV Kovalchuk… - Procedia Computer …, 2016 - Elsevier
This article presents the results of a study aimed at a developing an approach to the design
of information infrastructure of medical institutions that use knowledge-based clinical …

Patient‐Specific Modelling in Drug Design, Development and Selection Including its Role in Clinical Decision‐Making

N Shublaq, C Sansom… - Chemical Biology & Drug …, 2013 - Wiley Online Library
Genomics has made enormous progress in the twelve years since the publication of the first
draft human genome sequence, but it has not yet been translated into the clinic. Despite …