Identification of non-coding silencer elements and their regulation of gene expression

B Pang, JH van Weerd, FL Hamoen… - … Reviews Molecular Cell …, 2023 - nature.com
Cell type-and differentiation-specific gene expression is precisely controlled by genomic non-
coding regulatory elements (NCREs), which include promoters, enhancers, silencers and …

SilencerDB: a comprehensive database of silencers

W Zeng, S Chen, X Cui, X Chen, Z Gao… - Nucleic acids …, 2021 - academic.oup.com
Gene regulatory elements, including promoters, enhancers, silencers, etc., control
transcriptional programs in a spatiotemporal manner. Though these elements are known to …

Deciphering primate retinal aging at single-cell resolution

S Wang, Y Zheng, Q Li, X He, R Ren, W Zhang… - Protein & …, 2021 - academic.oup.com
The retina is a light-sensitive highly-organized tissue, which is vulnerable to aging and age-
related retinal diseases. Specifically, progressive retinal degeneration leads to visual …

HiChIPdb: a comprehensive database of HiChIP regulatory interactions

W Zeng, Q Liu, Q Yin, R Jiang… - Nucleic acids research, 2023 - academic.oup.com
Elucidating the role of 3D architecture of DNA in gene regulation is crucial for understanding
cell differentiation, tissue homeostasis and disease development. Among various chromatin …

Integrative mapping of the dog epigenome: Reference annotation for comparative intertissue and cross-species studies

KH Son, MBD Aldonza, AR Nam, KH Lee, JW Lee… - Science …, 2023 - science.org
Dogs have become a valuable model in exploring multifaceted diseases and biology
relevant to human health. Despite large-scale dog genome projects producing high-quality …

The DoGA consortium expression atlas of promoters and genes in 100 canine tissues

M Hörtenhuber, MK Hytönen, AK Mukarram… - Nature …, 2024 - nature.com
The dog, Canis lupus familiaris, is an important model for studying human diseases. Unlike
many model organisms, the dog genome has a comparatively poor functional annotation …

A Missense Variant in the Bardet-Biedl Syndrome 2 Gene (BBS2) Leads to a Novel Syndromic Retinal Degeneration in the Shetland Sheepdog

RJ Hitti-Malin, LM Burmeister, F Lingaas, M Kaukonen… - Genes, 2021 - mdpi.com
Canine progressive retinal atrophy (PRA) describes a group of hereditary diseases
characterized by photoreceptor cell death in the retina, leading to visual impairment. Despite …

Formal commentary

GD Aguirre, H Lohi, M Kaukonen, L Murgiano - PLoS Genetics, 2020 - journals.plos.org
Two recent papers by Gustavo Aguirre's and Hannes Lohi's groups have been published
describing the genetics of Progressive Retinal Atrophy (PRA) in Miniature Schnauzers. This …

[PDF][PDF] The genetic background of five canine models of rare human disease

J Niskanen - 2022 - helda.helsinki.fi
This thesis addresses the genetic background of five spontaneous canine models of rare
human disease. By utilizing genome-wide mapping methods, next-generation sequencing …

Genetic Investigations of Canine Idiopathic Epilepsy and Movement Disorders

CA Jenkins - 2023 - search.proquest.com
Dogs represent a fascinating species with dramatic variation in traits across hundreds of
breeds. Genetic bottlenecks, inbreeding, and selection for extreme phenotypes have led to …