Abstract Circuit diagrams and Unified Modeling Language diagrams are just two examples
of standard visual languages that help accelerate work by promoting regularity, removing …

Abstract Biological Pathway Exchange (BioPAX) is a standard language to represent
biological pathways at the molecular and cellular level and to facilitate the exchange of …

Abstract The Gene Ontology (GO) project (http://www. geneontology. org) develops and uses
a set of structured, controlled vocabularies for community use in annotating genes, gene …

Abstract The Biomolecular Interaction Network Database (BIND)(http://bind. ca) archives
biomolecular interaction, reaction, complex and pathway information. Our aim is to curate …

The effective integration of data and knowledge from many disparate sources will be crucial
to future drug discovery. Data integration is a key element of conducting scientific …

Background Rule-based modeling (RBM) is a powerful and increasingly popular approach
to modeling cell signaling networks. However, novel visual tools are needed in order to …

Abstract The Integrating Network Objects with Hierarchies (INOH) database is a highly
structured, manually curated database of signal transduction pathways including Mammalia …

Artificial cells are simple cell-like entities that possess certain properties of natural cells. In
general, artificial cells are constructed using three parts:(1) biological membranes that serve …

The detailed structure of molecular networks, including their dependence on conditions and
time, are now routinely assayed by various experimental techniques. Visualization is a vital …

With the integration of the KEGG and Predictome databases as well as two search engines
for coexpressed genes/proteins using data sets obtained from the Stanford Microarray …