Optimizing the Cell Painting assay for image-based profiling

BA Cimini, SN Chandrasekaran, M Kost-Alimova… - Nature protocols, 2023 - nature.com
In image-based profiling, software extracts thousands of morphological features of cells from
multi-channel fluorescence microscopy images, yielding single-cell profiles that can be used …

Scalable functional assays for the interpretation of human genetic variation

D Tabet, V Parikh, P Mali, FP Roth… - Annual Review of …, 2022 - annualreviews.org
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …

A single-cell atlas of human and mouse white adipose tissue

MP Emont, C Jacobs, AL Essene, D Pant, D Tenen… - Nature, 2022 - nature.com
White adipose tissue, once regarded as morphologically and functionally bland, is now
recognized to be dynamic, plastic and heterogenous, and is involved in a wide array of …

Inherited basis of visceral, abdominal subcutaneous and gluteofemoral fat depots

S Agrawal, M Wang, MDR Klarqvist, K Smith… - Nature …, 2022 - nature.com
For any given level of overall adiposity, individuals vary considerably in fat distribution. The
inherited basis of fat distribution in the general population is not fully understood. Here, we …

Genetics of sexually dimorphic adipose distribution in humans

GT Hansen, DR Sobreira, ZT Weber, AG Thornburg… - Nature …, 2023 - nature.com
Obesity-associated morbidity is exacerbated by abdominal obesity, which can be measured
as the waist-to-hip ratio adjusted for the body mass index (WHRadjBMI). Here we identify …

Cell Painting: a decade of discovery and innovation in cellular imaging

S Seal, MA Trapotsi, O Spjuth, S Singh… - Nature …, 2024 - nature.com
Modern quantitative image analysis techniques have enabled high-throughput, high-content
imaging experiments. Image-based profiling leverages the rich information in images to …

High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease

H Kim, KE Westerman, K Smith, J Chiou, JB Cole… - Diabetologia, 2023 - Springer
Aims/hypothesis Type 2 diabetes is highly polygenic and influenced by multiple biological
pathways. Rapid expansion in the number of type 2 diabetes loci can be leveraged to …

SPACe: an open-source, single-cell analysis of Cell Painting data

F Stossi, PK Singh, M Marini, K Safari… - Nature …, 2024 - nature.com
Phenotypic profiling by high throughput microscopy, including Cell Painting, has become a
leading tool for screening large sets of perturbations in cellular models. To efficiently …

A non-coding variant linked to metabolic obesity with normal weight affects actin remodelling in subcutaneous adipocytes

V Glunk, S Laber, N Sinnott-Armstrong… - Nature …, 2023 - nature.com
Recent large-scale genomic association studies found evidence for a genetic link between
increased risk of type 2 diabetes and decreased risk for adiposity-related traits, reminiscent …

Integrative proteogenomic analysis identifies COL6A3-derived endotrophin as a mediator of the effect of obesity on coronary artery disease

S Yoshiji, T Lu, G Butler-Laporte… - Nature Genetics, 2025 - nature.com
Obesity strongly increases the risk of cardiometabolic diseases, yet the underlying mediators
of this relationship are not fully understood. Given that obesity strongly influences circulating …