Matrix insertion–deletion systems

I Petre, S Verlan - Theoretical Computer Science, 2012 - Elsevier
We investigate in this article the operations of insertion and deletion working in a matrix-
controlled manner. We show that this allows to us strictly increase the computational power …

[PDF][PDF] Modelling DNA and RNA secondary structures using matrix insertion–deletion systems

L Kuppusamy, A Mahendran - International Journal of Applied …, 2016 - sciendo.com
Insertion and deletion are operations that occur commonly in DNA processing and RNA
editing. Since biological macromolecules can be viewed as symbols, gene sequences can …

On path-controlled insertion–deletion systems

H Fernau, L Kuppusamy, I Raman - Acta Informatica, 2019 - Springer
A graph-controlled insertion–deletion system is a regulated extension of an insertion–
deletion system. It has several components and each component contains some insertion …

[HTML][HTML] On the computational completeness of graph-controlled insertion–deletion systems with binary sizes

H Fernau, L Kuppusamy, I Raman - Theoretical Computer Science, 2017 - Elsevier
A graph-controlled insertion–deletion (GCID) system is a regulated extension of an insertion–
deletion system. Such a system has several components and each component has some …

Investigations on the power of matrix insertion-deletion systems with small sizes

H Fernau, L Kuppusamy, I Raman - Natural Computing, 2018 - Springer
Matrix insertion-deletion systems combine the idea of matrix control (a control mechanism
well established in regulated rewriting) with that of insertion and deletion (as opposed to …

A quantum finite automata approach to modeling the chemical reactions

AS Bhatia, S Zheng - Frontiers in Physics, 2020 - frontiersin.org
In recent years, the modeling interest has increased significantly from molecular level to
atomic and quantum levels. Computational chemistry plays a significant role in designing …

On the generative capacity of matrix insertion-deletion systems of small sum-norm

H Fernau, L Kuppusamy, I Raman - Natural Computing, 2021 - Springer
A matrix insertion-deletion system (or matrix ins-del system) is described by a set of insertion-
deletion rules presented in matrix form, which demands all rules of a matrix to be applied in …

Descriptional complexity of graph-controlled insertion-deletion systems

H Fernau, L Kuppusamy, I Raman - International Conference on …, 2016 - Springer
We consider graph-controlled insertion-deletion systems and prove that the systems with
sizes (i)(3; 1, 1, 1; 1, 0, 1),(ii)(3; 1, 1, 1; 1, 1, 0) and (iii)(2; 2, 0, 0; 1, 1, 1) are computationally …

Universal insertion grammars of size two

S Verlan, H Fernau, L Kuppusamy - Theoretical Computer Science, 2020 - Elsevier
In this paper, we show that pure insertion grammars of size 2 (ie, inserting two symbols in a
left and right context, each consisting of two symbols) can characterize all recursively …

Modeling of RNA secondary structures using two-way quantum finite automata

AS Bhatia, A Kumar - Chaos, Solitons & Fractals, 2018 - Elsevier
Quantum finite automata (QFA) play a crucial role in quantum information processing theory.
The representation of ribonucleic acid (RNA) and deoxyribonucleic acid (DNA) structures …