Water dynamics in the hydration shells of biomolecules

D Laage, T Elsaesser, JT Hynes - Chemical Reviews, 2017 - ACS Publications
The structure and function of biomolecules are strongly influenced by their hydration shells.
Structural fluctuations and molecular excitations of hydrating water molecules cover a broad …

Dielectric continuum methods for quantum chemistry

JM Herbert - Wiley Interdisciplinary Reviews: Computational …, 2021 - Wiley Online Library
This review describes the theory and implementation of implicit solvation models based on
continuum electrostatics. Within quantum chemistry this formalism is sometimes …

A graph representation of molecular ensembles for polymer property prediction

M Aldeghi, CW Coley - Chemical Science, 2022 - pubs.rsc.org
Synthetic polymers are versatile and widely used materials. Similar to small organic
molecules, a large chemical space of such materials is hypothetically accessible …

Overview of wastewater treatment methods with special focus on biopolymer chitin-chitosan

S Sarode, P Upadhyay, MA Khosa, T Mak… - International journal of …, 2019 - Elsevier
Heavy metals have substantively high values of half-lives with nonbiodegradable chemical
nature. At the same time, their ionic compounds have amazing ability of ionization in …

In silico ADME/T modelling for rational drug design

Y Wang, J Xing, Y Xu, N Zhou, J Peng… - Quarterly reviews of …, 2015 - cambridge.org
In recent decades, in silico absorption, distribution, metabolism, excretion (ADME), and
toxicity (T) modelling as a tool for rational drug design has received considerable attention …

Development of the modern theory of polymeric complex coacervation

CE Sing - Advances in colloid and interface science, 2017 - Elsevier
Oppositely charged polymers can undergo the process of complex coacervation, which
refers to a liquid–liquid phase separation driven by electrostatic attraction. These materials …

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

SR McGuffee, AH Elcock - PLoS computational biology, 2010 - journals.plos.org
A longstanding question in molecular biology is the extent to which the behavior of
macromolecules observed in vitro accurately reflects their behavior in vivo. A number of …

Withanone from Withania somnifera Attenuates SARS-CoV-2 RBD and Host ACE2 Interactions to Rescue Spike Protein Induced Pathologies in Humanized Zebrafish …

A Balkrishna, S Pokhrel, H Singh, M Joshi… - Drug design …, 2021 - Taylor & Francis
Purpose SARS-CoV-2 engages human ACE2 through its spike (S) protein receptor binding
domain (RBD) to enter the host cell. Recent computational studies have reported that …

Computational prediction of protein–protein binding affinities

T Siebenmorgen, M Zacharias - Wiley Interdisciplinary Reviews …, 2020 - Wiley Online Library
Protein–protein interactions form central elements of almost all cellular processes.
Knowledge of the structure of protein–protein complexes but also of the binding affinity is of …

Mapping the per-residue surface electrostatic potential of CAPRIN1 along its phase-separation trajectory

Y Toyama, AK Rangadurai… - Proceedings of the …, 2022 - National Acad Sciences
Electrostatic interactions and charge balance are important for the formation of biomolecular
condensates involving proteins and nucleic acids. However, a detailed, atomistic picture of …