MST-m6A: A Novel Multi-Scale Transformer-based Framework for Accurate Prediction of m6A Modification Sites Across Diverse Cellular Contexts

Q Su, NT Pham, L Wei, B Manavalan - Journal of Molecular Biology, 2024 - Elsevier
Abstract N6-methyladenosine (m6A) modification, a prevalent epigenetic mark in eukaryotic
cells, is crucial in regulating gene expression and RNA metabolism. Accurately identifying …

iACP-DFSRA: Identification of Anticancer Peptides Based on a Dual-channel Fusion Strategy of ResCNN and Attention

X Wang, Z Zhang, C Liu - Journal of Molecular Biology, 2024 - Elsevier
Anticancer peptides (ACPs) have been widely applied in the treatment of cancer owing to
good safety, rational side effects, and high selectivity. However, the number of ACPs that …

DOGpred: A Novel Deep Learning Framework for Accurate Identification of Human O-linked Threonine Glycosylation Sites

KW Lee, NT Pham, HJ Min, HW Park, JW Lee… - Journal of Molecular …, 2025 - Elsevier
O-linked glycosylation is a crucial post-transcriptional modification that regulates protein
function and biological processes. Dysregulation of this process is associated with various …

Discovery of anticancer peptides from natural and generated sequences using deep learning

J Yue, T Li, J Xu, Z Chen, Y Li, S Liang, Z Liu… - International Journal of …, 2025 - Elsevier
Anticancer peptides (ACPs) demonstrate significant potential in clinical cancer treatment
due to their ability to selectively target and kill cancer cells. In recent years, numerous …

[HTML][HTML] Antimicrobial Peptide with a Bent Helix Motif Identified in Parasitic Flatworm Mesocestoides corti

T Rončević, M Gerdol, S Pacor… - … journal of molecular …, 2024 - pmc.ncbi.nlm.nih.gov
The urgent need for antibiotic alternatives has driven the search for antimicrobial peptides
(AMPs) from many different sources, yet parasite-derived AMPs remain underexplored. In …

[HTML][HTML] Role of Peptide Associations in Enhancing the Antimicrobial Activity of Adepantins: Comparative Molecular Dynamics Simulations and Design Assessments

M Maleš, D Juretić, L Zoranić - International journal of molecular sciences, 2024 - mdpi.com
Adepantins are peptides designed to optimize antimicrobial biological activity through the
choice of specific amino acid residues, resulting in helical and amphipathic structures. This …

Anticancer Peptides Classification Using Long-Short-Term Memory with Novel Feature Representation

N Al Tahifah, MS Ibrahim, E Rehman, N Ahmed… - IEEE …, 2024 - ieeexplore.ieee.org
Cancer treatment is a challenging endeavor because of the intricacy, heterogeneity, and
diversity of cancer causes. Comprehensive therapeutic approaches are crucial for cancer …