Allostery: an overview of its history, concepts, methods, and applications

J Liu, R Nussinov - PLoS computational biology, 2016 - journals.plos.org
The concept of allostery has evolved in the past century. In this Editorial, we briefly overview
the history of allostery, from the pre-allostery nomenclature era starting with the Bohr effect …

Integrated computational approaches and tools for allosteric drug discovery

O Sheik Amamuddy, W Veldman, C Manyumwa… - International journal of …, 2020 - mdpi.com
Understanding molecular mechanisms underlying the complexity of allosteric regulation in
proteins has attracted considerable attention in drug discovery due to the benefits and …

Allosteric modulator discovery: from serendipity to structure-based design

S Lu, X He, D Ni, J Zhang - Journal of medicinal chemistry, 2019 - ACS Publications
Allosteric modulators bound to structurally diverse allosteric sites can achieve better
pharmacological advantages than orthosteric ligands. The discovery of allosteric …

The role of dimer asymmetry and protomer dynamics in enzyme catalysis

TH Kim, P Mehrabi, Z Ren, A Sljoka, C Ing, A Bezginov… - Science, 2017 - science.org
INTRODUCTION Enzymes greatly accelerate biochemical reactions by providing a scaffold
to bind and recognize substrate, position catalytic units, and facilitate the formation of …

Exploring and learning the universe of protein allostery using artificial intelligence augmented biophysical and computational approaches

S Agajanian, M Alshahrani, F Bai, P Tao… - Journal of chemical …, 2023 - ACS Publications
Allosteric mechanisms are commonly employed regulatory tools used by proteins to
orchestrate complex biochemical processes and control communications in cells. The …

[HTML][HTML] Protein dynamics underlying allosteric regulation

MA Astore, AS Pradhan, EH Thiede… - Current Opinion in …, 2024 - Elsevier
Allostery is the mechanism by which information and control are propagated in
biomolecules. It regulates ligand binding, chemical reactions, and conformational changes …

[HTML][HTML] NMR tools to detect protein allostery

O Gampp, H Kadavath, R Riek - Current Opinion in Structural Biology, 2024 - Elsevier
Allostery is a fundamental mechanism of cellular homeostasis by intra-protein
communication between distinct functional sites. It is an internal process of proteins to steer …

Enhanced specificity mutations perturb allosteric signaling in CRISPR-Cas9

L Nierzwicki, KW East, UN Morzan, PR Arantes… - Elife, 2021 - elifesciences.org
CRISPR-Cas9 (clustered regularly interspaced short palindromic repeat and associated
Cas9 protein) is a molecular tool with transformative genome editing capabilities. At the …

[HTML][HTML] Biomolecular NMR spectroscopy in the era of artificial intelligence

VK Shukla, GT Heller, DF Hansen - Structure, 2023 - cell.com
Biomolecular nuclear magnetic resonance (NMR) spectroscopy and artificial intelligence
(AI) have a burgeoning synergy. Deep learning-based structural predictors have forever …

On the perturbation nature of allostery: sites, mutations, and signal modulation

E Guarnera, IN Berezovsky - Current opinion in structural biology, 2019 - Elsevier
Regardless of the diversity of systems, allosteic signalling is found to be always caused by
perturbations. This recurring trait of allostery serves as a foundation for developing different …