Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics

T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …

Sources, resolution and physiological relevance of R-loops and RNA–DNA hybrids

E Petermann, L Lan, L Zou - Nature reviews Molecular cell biology, 2022 - nature.com
RNA–DNA hybrids are generated during transcription, DNA replication and DNA repair and
are crucial intermediates in these processes. When RNA–DNA hybrids are stably formed in …

Walking a tightrope: the complex balancing act of R-loops in genome stability

JR Brickner, JL Garzon, KA Cimprich - Molecular cell, 2022 - cell.com
Although transcription is an essential cellular process, it is paradoxically also a well-
recognized cause of genomic instability. R-loops, non-B DNA structures formed when …

Immunomodulation—a general review of the current state-of-the-art and new therapeutic strategies for targeting the immune system

M Strzelec, J Detka, P Mieszczak… - Frontiers in …, 2023 - frontiersin.org
In recent years, there has been a tremendous development of biotechnological,
pharmacological, and medical techniques which can be implemented in the functional …

R-loops as Janus-faced modulators of DNA repair

A Marnef, G Legube - Nature cell biology, 2021 - nature.com
R-loops are non-B DNA structures with intriguing dual consequences for gene expression
and genome stability. In addition to their recognized roles in triggering DNA double-strand …

RNA transcripts stimulate homologous recombination by forming DR-loops

J Ouyang, T Yadav, JM Zhang, H Yang, E Rheinbay… - Nature, 2021 - nature.com
Homologous recombination (HR) repairs DNA double-strand breaks (DSBs) in the S and G2
phases of the cell cycle,–. Several HR proteins are preferentially recruited to DSBs at …

RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA

N Kaminski, AR Wondisford, Y Kwon, ML Lynskey… - Molecular cell, 2022 - cell.com
Alternative lengthening of telomeres (ALT) is a homology-directed repair (HDR) mechanism
of telomere elongation that controls proliferation in subsets of aggressive cancer. Recent …

BRCA1 binds TERRA RNA and suppresses R-Loop-based telomeric DNA damage

J Vohhodina, LJ Goehring, B Liu, Q Kong… - Nature …, 2021 - nature.com
R-loop structures act as modulators of physiological processes such as transcription
termination, gene regulation, and DNA repair. However, they can cause transcription …

miRNA biogenesis and inherited disorders: clinico-molecular insights

D Pelletier, B Rivera, MR Fabian, WD Foulkes - Trends in Genetics, 2023 - cell.com
MicroRNAs (miRNAs) play vital roles in the regulation of gene expression, a process known
as miRNA-induced gene silencing. The human genome codes for many miRNAs, and their …

C16orf72/HAPSTR1/TAPR1 functions with BRCA1/Senataxin to modulate replication-associated R-loops and confer resistance to PARP disruption

AB Sharma, MK Ramlee, J Kosmin, MR Higgs… - Nature …, 2023 - nature.com
While the toxicity of PARP inhibitors to cells with defects in homologous recombination (HR)
is well established, other synthetic lethal interactions with PARP1/PARP2 disruption are …