Repair of deaminated bases in DNA

YW Kow - Free Radical Biology and Medicine, 2002 - Elsevier
Deamination of DNA bases can occur spontaneously, generating highly mutagenic lesions
such as uracil, hypoxanthine, and xanthine. When cells are under oxidative stress that is …

Crystal structures of A‐DNA duplexes

MC Wahl, M Sundaralingam - Biopolymers: Original Research …, 1997 - Wiley Online Library
All crystal structures of A‐DNA duplexes exhibit a typical crystal packing, with the termini of
one molecule abutting the shallow grooves of symmetry related neighbors, while all other …

Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA

MA El Hassan, CR Calladine - Journal of molecular biology, 1996 - Elsevier
When DNA is bent around a protein, it must distort. The distortion occurs by changes in the
conformation of successive dinucleotide steps. Bending does not necessarily occur …

Conformational characteristics of DNA: empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps

MA El Hassan, CR Calladine - … Transactions of the …, 1997 - royalsocietypublishing.org
This paper is concerned with an investigation of the geometry and structure of DNA as
revealed by X–ray diffraction of single crystal oligomeric structures. A database of atomic …

[HTML][HTML] Purification and characterization of a novel deoxyinosine-specific enzyme, deoxyinosine 3'endonuclease, from Escherichia coli.

M Yao, Z Hatahet, RJ Melamede, YW Kow - Journal of biological chemistry, 1994 - Elsevier
We have purified a novel endonuclease from Escherichia coli that recognizes deoxyinosine,
a deamination product of deoxyadenosine in DNA. This activity, which we named …

Inosine and its methyl derivatives: Occurrence, biogenesis, and function in RNA

N Dutta, I Deb, J Sarzynska, A Lahiri - Progress in Biophysics and Molecular …, 2022 - Elsevier
Inosine is one of the most common post-transcriptional modifications. Since its discovery, it
has been noted for its ability to contribute to non-Watson-Crick interactions within RNA …

Direct NMR evidence that transient tautomeric and anionic states in dG· dT form Watson–Crick-like base pairs

ES Szymanski, IJ Kimsey… - Journal of the American …, 2017 - ACS Publications
The replicative and translational machinery utilizes the unique geometry of canonical G· C
and A· T/U Watson–Crick base pairs to discriminate against DNA and RNA mismatches in …

Studies on the base pairing properties of deoxyinosine by solid phase hybridisation to oligonucleotides

SC Case-Green, EM Southern - Nucleic acids research, 1994 - academic.oup.com
Extensive analyses of the base-pairing properties of deoxyinosine to A, C, G and T were
carried out by measuring the hybridisation of oligonucleotides with deoxyinosine In various …

Single‐Crystal X‐Ray Diffraction Studies of Oligonucleotides and Oligonucleotide–Drug Complexes

O Kennard, WN Hunter - Angewandte Chemie International …, 1991 - Wiley Online Library
Nucleic acids constitute the library of genetic information for all living organisms. They also
play a regulatory role in many biological events concerned with the utilization of genetic …

Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes

MA Young, G Ravishanker, DL Beveridge… - Biophysical journal, 1995 - cell.com
Sequence-dependent bending of the helical axes in 112 oligonucleotide duplex crystal
structures resident in the Nucleic Acid Database have been analyzed and compared with …