Translating cancer genomics into precision medicine with artificial intelligence: applications, challenges and future perspectives

J Xu, P Yang, S Xue, B Sharma, M Sanchez-Martin… - Human genetics, 2019 - Springer
In the field of cancer genomics, the broad availability of genetic information offered by next-
generation sequencing technologies and rapid growth in biomedical publication has led to …

PubTator central: automated concept annotation for biomedical full text articles

CH Wei, A Allot, R Leaman, Z Lu - Nucleic acids research, 2019 - academic.oup.com
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …

Pharmacometabolomics informs quantitative radiomics for glioblastoma diagnostic innovation

T Katsila, MT Matsoukas, GP Patrinos… - OMICS: A Journal of …, 2017 - liebertpub.com
Applications of omics systems biology technologies have enormous promise for radiology
and diagnostics in surgical fields. In this context, the emerging fields of radiomics (a systems …

deepBioWSD: effective deep neural word sense disambiguation of biomedical text data

A Pesaranghader, S Matwin, M Sokolova… - Journal of the …, 2019 - academic.oup.com
Objective In biomedicine, there is a wealth of information hidden in unstructured narratives
such as research articles and clinical reports. To exploit these data properly, a word sense …

Deep learning of mutation-gene-drug relations from the literature

K Lee, B Kim, Y Choi, S Kim, W Shin, S Lee, S Park… - BMC …, 2018 - Springer
Background Molecular biomarkers that can predict drug efficacy in cancer patients are
crucial components for the advancement of precision medicine. However, identifying these …

Signalling maps in cancer research: construction and data analysis

M Kondratova, N Sompairac, E Barillot, A Zinovyev… - Database, 2018 - academic.oup.com
Generation and usage of high-quality molecular signalling network maps can be augmented
by standardizing notations, establishing curation workflows and application of computational …

BERST: An engine and tool for exploring biomedical entities and relationships

T Bai, Y Ge, C Yang, X Liu, L Gong… - Chinese Journal of …, 2019 - Wiley Online Library
To facilitate the search of rapidly growing biomedical knowledge in literature, we developed
a Biomedical entity‐relationship search tool (BERST). It is also a biomedical knowledge …

Tool for filtering PubMed search results by sample size

C Baladrón, A Santos-Lozano, JM Aguiar… - Journal of the …, 2018 - academic.oup.com
Objective The most used search engine for scientific literature, PubMed, provides tools to
filter results by several fields. When searching for reports on clinical trials, sample size can …

Is the ranking of PubMed similar articles good enough? An evaluation of text similarity methods for three datasets

M Neves, I Schadock, B Eusemann… - The 22nd Workshop …, 2023 - aclanthology.org
The use of seed articles in information retrieval provides many advantages, such as a
longercontext and more details about the topic being searched for. Given a seed article (ie, a …

[图书][B] Modeling faceted browsing with category theory for reuse and interoperability

DR Harris - 2017 - search.proquest.com
Faceted browsing (also called faceted search or faceted navigation) is an exploratory search
model where facets assist in the interactive navigation of search results. Facets are attributes …