Computational approaches to therapeutic antibody design: established methods and emerging trends

RA Norman, F Ambrosetti, AMJJ Bonvin… - Briefings in …, 2020 - academic.oup.com
Antibodies are proteins that recognize the molecular surfaces of potentially noxious
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …

Antibody validation

J Bordeaux, AW Welsh, S Agarwal, E Killiam… - …, 2010 - Taylor & Francis
Antibodies are among the most frequently used tools in basic science research and in
clinical assays, but there are no universally accepted guidelines or standardized methods …

[HTML][HTML] Realizing the promise of reverse phase protein arrays for clinical, translational, and basic research: a workshop report: the RPPA (Reverse Phase Protein …

R Akbani, KF Becker, N Carragher, T Goldstein… - Molecular & cellular …, 2014 - Elsevier
Reverse phase protein array (RPPA) technology introduced a miniaturized “antigen-down”
or “dot-blot” immunoassay suitable for quantifying the relative, semi-quantitative or …

Notch signals positively regulate activity of the mTOR pathway in T-cell acute lymphoblastic leukemia

SM Chan, AP Weng, R Tibshirani… - Blood, The Journal of …, 2007 - ashpublications.org
Constitutive Notch activation is required for the proliferation of a subgroup of T-cell acute
lymphoblastic leukemia (T-ALL). Downstream pathways that transmit pro-oncogenic signals …

A portrait of tissue phosphoprotein stability in the clinical tissue procurement process

V Espina, KH Edmiston, M Heiby, M Pierobon… - Molecular & cellular …, 2008 - ASBMB
Little is known about the preanalytical fluctuations of phosphoproteins during tissue
procurement for molecular profiling. This information is crucial to establish guidelines for the …

Reverse-phase protein lysate microarrays for cell signaling analysis

B Spurrier, S Ramalingam, S Nishizuka - Nature protocols, 2008 - nature.com
Abstract'Reverse-phase'protein lysate microarray (RPA) assays use micro-scale, cell lysate
dot blots that are printed to a substrate, followed by quantitative immunochemical protein …

Using CellMiner 1.6 for systems pharmacology and genomic analysis of the NCI-60

WC Reinhold, M Sunshine, S Varma, JH Doroshow… - Clinical Cancer …, 2015 - AACR
The NCI-60 cancer cell line panel provides a premier model for data integration, and
systems pharmacology being the largest publicly available database of anticancer drug …

Antibody informatics for drug discovery

H Shirai, C Prades, R Vita, P Marcatili, B Popovic… - … et Biophysica Acta (BBA …, 2014 - Elsevier
More and more antibody therapeutics are being approved every year, mainly due to their
high efficacy and antigen selectivity. However, it is still difficult to identify the antigen, and …

New era of integrated cancer biomarker discovery using reverse-phase protein arrays

SS Nishizuka, GB Mills - Drug metabolism and pharmacokinetics, 2016 - Elsevier
The ultimate goal of cancer biomarker discovery is to use individual patient-derived
biochemical information to improve patients' outcomes. A recent increase in the spectrum of …

The European antibody network's practical guide to finding and validating suitable antibodies for research

G Roncador, P Engel, L Maestre, AP Anderson… - MAbs, 2016 - Taylor & Francis
Antibodies are widely exploited as research/diagnostic tools and therapeutics. Despite
providing exciting research opportunities, the multitude of available antibodies also offers a …