The precision prevention and therapy of HPV‐related cervical cancer: new concepts and clinical implications

Z Hu, D Ma - Cancer medicine, 2018 - Wiley Online Library
Cervical cancer is the third most common cancer in women worldwide, with concepts and
knowledge about its prevention and treatment evolving rapidly. Human papillomavirus …

Cancer transcriptome profiling at the juncture of clinical translation

M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …

Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma

Y Jiang, A Sun, Y Zhao, W Ying, H Sun, X Yang, B Xing… - Nature, 2019 - nature.com
Hepatocellular carcinoma is the third leading cause of deaths from cancer worldwide.
Infection with the hepatitis B virus is one of the leading risk factors for developing …

[HTML][HTML] VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis

MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster… - BMC …, 2018 - Springer
Background RNA sequencing has become a ubiquitous technology used throughout life
sciences as an effective method of measuring RNA abundance quantitatively in tissues and …

[PDF][PDF] Viral-human chimeric transcript predisposes risk to liver cancer development and progression

CC Lau, T Sun, AKK Ching, M He, JW Li, AM Wong… - Cancer cell, 2014 - cell.com
The mutagenic effect of hepatitis B (HBV) integration in predisposing risk to hepatocellular
carcinoma (HCC) remains elusive. In this study, we performed transcriptome sequencing of …

[HTML][HTML] Overview of virus metagenomic classification methods and their biological applications

S Nooij, D Schmitz, H Vennema, A Kroneman… - Frontiers in …, 2018 - frontiersin.org
Metagenomics poses opportunities for clinical and public health virology applications by
offering a way to assess complete taxonomic composition of a clinical sample in an …

[HTML][HTML] Development of a virus detection and discovery pipeline using next generation sequencing

T Ho, IE Tzanetakis - Virology, 2014 - Elsevier
Next generation sequencing (NGS) has revolutionized virus discovery. Notwithstanding, a
vertical pipeline, from sample preparation to data analysis, has not been available to the …

[HTML][HTML] VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data

Q Wang, P Jia, Z Zhao - PloS one, 2013 - journals.plos.org
Next generation sequencing (NGS) technologies allow us to explore virus interactions with
host genomes that lead to carcinogenesis or other diseases; however, this effort is largely …

The direct and indirect roles of HBV in liver cancer: prospective markers for HCC screening and potential therapeutic targets

M Ringelhan, T O'Connor, U Protzer… - The Journal of …, 2015 - Wiley Online Library
Chronic hepatitis B virus (HBV) infection remains the number one risk factor for
hepatocellular carcinoma (HCC), accounting for more than 600 000 deaths/year. Despite …

[HTML][HTML] Finding the lost treasures in exome sequencing data

DC Samuels, L Han, J Li, S Quanghu, TA Clark, Y Shyr… - Trends in Genetics, 2013 - cell.com
Exome sequencing is one of the most cost-efficient sequencing approaches for conducting
genome research on coding regions. However, significant portions of the reads obtained in …