Gene Sequence Assembly Algorithm Model Based on the DBG Strategy and Its Application

H Shi, G Wu - Journal of Healthcare Engineering, 2021 - Wiley Online Library
With the continuous development of sequencing technology, the amount of bioinformatics
data has increased geometrically, and the massive amount of bioinformatics data puts …

A new approach for de Bruijn graph construction in de novo genome assembling

EM de Armas, LC Castro, M Holanda… - … on Bioinformatics and …, 2019 - ieeexplore.ieee.org
Fragment assembly is a current fundamental problem in bioinformatics. In the absence of a
reference genome sequence that could guide the whole process, a de Bruijn Graph data …

K-mer mapping and RDBMS indexes

EM de Armas, PCG Ferreira, EH Haeusler… - … in Bioinformatics and …, 2020 - Springer
K-mer Mapping, an internal process for De Novo NGS genome fragments assembly
methods, constitutes a computational challenge due to its high main memory consumption …

An External Memory Approach for Large Genome De Novo Assembly

EM de Armas, S Lifschitz - Brazilian Symposium on Bioinformatics, 2022 - Springer
De novo genome assembly of sequenced reads is a fundamental problem in bioinformatics.
When there is no reference genome sequence to guide the process, many assemblers …

A Classification of de Bruijn Graph Approaches for De Novo Fragment Assembly

EM de Armas, M Holanda, D de Oliveira… - Brazilian Symposium on …, 2020 - Springer
Research in bioinformatics has changed rapidly since the advent of next-generation
sequencing (NGS). Despite the positive impact on cost reduction, assembling the generated …

K-mer Mapping and RDBMS Indexes

EH Haeusler, MT de Holanda… - … in Bioinformatics and …, 2020 - books.google.com
K-mer Mapping, an internal process for De Novo NGS genome fragments assembly
methods, constitutes a computational challenge due to its high main memory consumption …

[PDF][PDF] K-mer Mapping and RDBMS Indexes

EM de Armasº, PCG Ferreira - researchgate.net
K-mer Mapping, an internal process for De Novo NGS genome fragments assembly
methods, constitutes a computational challenge due to its high main memory consumption …

[PDF][PDF] Prof. Marcus Vinicius Soledade Poggi de Aragao

EH Haeusler - 2019 - maxwell.vrac.puc-rio.br
First of all, I am really grateful for my family and friends. I am especially grateful to my mother,
my father and my husband, who have always been supporting all the decisions in my life …

[PDF][PDF] Implementation and Evaluation of Dynamic de Bruijn Graph by Adding Dynamic Edges

A Amrutkar, K Baldha, S Dubey - 2017 - sakshidubey.com
The production of millions of reads from DNA samples for genome sequencing is now
possible due to rapid advancement in sequencing technologies. De Bruijn graph is a …