What genomic data can reveal about eco-evolutionary dynamics

SM Rudman, MA Barbour, K Csilléry… - Nature ecology & …, 2018 - nature.com
Recognition that evolution operates on the same timescale as ecological processes has
motivated growing interest in eco-evolutionary dynamics. Nonetheless, generating sufficient …

RADseq approaches and applications for forest tree genetics

TL Parchman, JP Jahner, KA Uckele… - Tree Genetics & …, 2018 - Springer
As tree species vary extensively in genome size, complexity, and resource development,
reduced representation methods have been increasingly employed for the generation of …

Population genomics analysis with RAD, reprised: Stacks 2

AG Rivera-Colón, J Catchen - Marine genomics: methods and protocols, 2022 - Springer
Restriction enzymes have been one of the primary tools in the population genetics toolkit for
50 years, being coupled with each new generation of technology to provide a more detailed …

Genetic patterns in Montipora capitata across an environmental mosaic in Kāne'ohe Bay, O'ahu, Hawai'i

C Caruso, M Rocha de Souza, L Ruiz‐Jones… - Molecular …, 2022 - Wiley Online Library
Spatial genetic structure (SGS) is important to a population's ability to adapt to
environmental change. For species that reproduce both sexually and asexually, the relative …

Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data

AG Rivera‐Colón, NC Rochette… - Molecular ecology …, 2021 - Wiley Online Library
Restriction‐site associated DNA sequencing (RADseq) has become a powerful and
versatile tool in modern population genomics, enabling large‐scale evolutionary and …

Genotyping‐by‐sequencing for biogeography

F Vaux, L Dutoit, CI Fraser… - Journal of Biogeography, 2023 - Wiley Online Library
Aim Genotyping‐by‐sequencing (GBS) and similar reduced‐representation sequencing
methods, such as restriction site‐associated DNA sequencing (RADseq), have been …

Significance and limitations of the use of next-generation sequencing technologies for detecting mutational signatures

A Abbasi, LB Alexandrov - DNA repair, 2021 - Elsevier
Next generation sequencing technologies (NGS) have been critical in characterizing the
genomic landscape and untangling the genetic heterogeneity of human cancer. Since its …

How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)

P Hühn, MS Dillenberger… - Molecular …, 2022 - refubium.fu-berlin.de
Analysing multiple genomic regions while incorporating detection and qualification of
discordance among regions has become standard for understanding phylogenetic …

Genetic Adaptation of Siberian Larch (Larix sibirica Ledeb.) to High Altitudes

SV Novikova, VV Sharov, NV Oreshkova… - International Journal of …, 2023 - mdpi.com
Forest trees growing in high altitude conditions offer a convenient model for studying
adaptation processes. They are subject to a whole range of adverse factors that are likely to …

Geographic patterns of genomic diversity and structure in the C4 grass Panicum hallii across its natural distribution

JD Palacio-Mejía, PP Grabowski, EM Ortiz… - AoB plants, 2021 - academic.oup.com
Geographic patterns of within-species genomic diversity are shaped by evolutionary
processes, life history and historical and contemporary factors. New genomic approaches …