[HTML][HTML] Mechanistic concepts of iron-sulfur protein biogenesis in Biology

JJ Braymer, SA Freibert, M Rakwalska-Bange… - Biochimica et Biophysica …, 2021 - Elsevier
Abstract Iron-sulfur (Fe/S) proteins are present in virtually all living organisms and are
involved in numerous cellular processes such as respiration, photosynthesis, metabolic …

Synthesis of theories on cellular powering, coherence, homeostasis and electro‐mechanics: Murburn concept and evolutionary perspectives

KM Manoj, L Jaeken - Journal of Cellular Physiology, 2023 - Wiley Online Library
If evolution was/is a fact, a simplified/unifying approach to explain cellular physiology is
warranted. Such a perspective should agree with the thermodynamic, kinetic, structural, and …

pr2‐primers: An 18S rRNA primer database for protists

D Vaulot, S Geisen, F Mahé… - Molecular Ecology …, 2022 - Wiley Online Library
Metabarcoding of microbial eukaryotes (collectively known as protists) has developed
tremendously in the last decade, almost solely relying on the 18S rRNA gene. As microbial …

Energetics and evolution of anaerobic microbial eukaryotes

SA Muñoz-Gómez - Nature Microbiology, 2023 - nature.com
Mitochondria and aerobic respiration have been suggested to be required for the evolution
of eukaryotic cell complexity. Aerobic respiration is several times more energetically efficient …

A machine-learning-based alternative to phylogenetic bootstrap

N Ecker, D Huchon, Y Mansour, I Mayrose… - …, 2024 - academic.oup.com
Motivation Currently used methods for estimating branch support in phylogenetic analyses
often rely on the classic Felsenstein's bootstrap, parametric tests, or their approximations. As …

Anaerobic ciliates as a model group for studying symbioses in oxygen‐depleted environments

J Rotterová, VP Edgcomb, I Čepička… - Journal of Eukaryotic …, 2022 - Wiley Online Library
Anaerobiosis has independently evolved in multiple lineages of ciliates, allowing them to
colonize a variety of anoxic and oxygen‐depleted habitats. Anaerobic ciliates commonly …

The murburn precepts for aerobic respiration and redox homeostasis

KM Manoj, NM Bazhin - Progress in Biophysics and Molecular Biology, 2021 - Elsevier
Murburn concept is a new perspective to metabolism which posits that certain redox
enzymes/proteins mediate catalysis outside their active site, via diffusible reactive oxygen …

The Phylogenetic Position of the Enigmatic, Polypodium hydriforme (Cnidaria, Polypodiozoa): Insights from Mitochondrial Genomes

M Novosolov, D Yahalomi, ES Chang… - Genome Biology and …, 2022 - academic.oup.com
Polypodium hydriforme is an enigmatic parasite that belongs to the phylum Cnidaria. Its
taxonomic position has been debated: whereas it was previously suggested to be part of …

The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes

S Santini, Q Schenkelaars, C Jourda, M Duchesne… - BMC biology, 2023 - Springer
Background Explaining the emergence of the hallmarks of bilaterians is a central focus of
evolutionary developmental biology—evodevo—and evolutionary genomics. For this …

Designed to breathe: synthetic biology applications in plant hypoxia

M Lavilla-Puerta, B Giuntoli - Plant Physiology, 2025 - academic.oup.com
Over the past years, plant hypoxia research has produced a considerable number of new
resources to monitor low oxygen responses in model species, mainly Arabidopsis thaliana …