[HTML][HTML] MicroRNAs: new biomarkers for diagnosis, prognosis, therapy prediction and therapeutic tools for breast cancer

G Bertoli, C Cava, I Castiglioni - Theranostics, 2015 - ncbi.nlm.nih.gov
Dysregulation of microRNAs (miRNAs) is involved in the initiation and progression of
several human cancers, including breast cancer (BC), as strong evidence has been found …

One-class classification: taxonomy of study and review of techniques

SS Khan, MG Madden - The Knowledge Engineering Review, 2014 - cambridge.org
One-class classification (OCC) algorithms aim to build classification models when the
negative class is either absent, poorly sampled or not well defined. This unique situation …

TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes

B Meynard-Piganeau, C Feinauer… - Proceedings of the …, 2024 - National Acad Sciences
The accurate prediction of binding between T cell receptors (TCR) and their cognate
epitopes is key to understanding the adaptive immune response and developing …

Machine learning for big data analytics in plants

C Ma, HH Zhang, X Wang - Trends in plant science, 2014 - cell.com
Rapid advances in high-throughput genomic technology have enabled biology to enter the
era of 'Big Data'(large datasets). The plant science community not only needs to build its …

Automated biosignal quality analysis for electromyography using a one-class support vector machine

GD Fraser, ADC Chan, JR Green… - IEEE Transactions on …, 2014 - ieeexplore.ieee.org
This paper introduces the importance of biosignal quality assessment and presents a pattern
classification approach to differentiate clean from contaminated electromyography (EMG) …

A review of computational tools in microRNA discovery

CPC Gomes, JH Cho, L Hood, OL Franco… - Frontiers in …, 2013 - frontiersin.org
Since microRNAs (miRNAs) were discovered, their impact on regulating various biological
activities has been a surprising and exciting field. Knowing the entire repertoire of these …

On protocols and measures for the validation of supervised methods for the inference of biological networks

M Schrynemackers, R Küffner, P Geurts - Frontiers in genetics, 2013 - frontiersin.org
Networks provide a natural representation of molecular biology knowledge, in particular to
model relationships between biological entities such as genes, proteins, drugs, or diseases …

Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential

C Cava, G Bertoli, I Castiglioni - BMC systems biology, 2015 - Springer
Background Development of human cancer can proceed through the accumulation of
different genetic changes affecting the structure and function of the genome. Combined …

The discovery approaches and detection methods of microRNAs

Y Huang, Q Zou, SP Wang, SM Tang, GZ Zhang… - Molecular biology …, 2011 - Springer
MicroRNAs (miRNAs) are small, highly conserved, non-coding RNAs that regulate gene
expression of target mRNAs through cleavage or translational inhibition. Computer-based …

A study of microRNAs in silico and in vivo: bioinformatics approaches to microRNA discovery and target identification

M Yousef, L Showe, M Showe - The FEBS journal, 2009 - Wiley Online Library
The discovery that microRNAs (miRNAs) are synthesized as hairpin‐containing precursors
and share many features has stimulated the development of several computational …