[HTML][HTML] KNIME for reproducible cross-domain analysis of life science data

A Fillbrunn, C Dietz, J Pfeuffer, R Rahn… - Journal of …, 2017 - Elsevier
Experiments in the life sciences often involve tools from a variety of domains such as mass
spectrometry, next generation sequencing, or image processing. Passing the data between …

Hitting the target: how T cells detect and eliminate tumors

AE Zamora, JC Crawford, PG Thomas - The Journal of Immunology, 2018 - journals.aai.org
The successes of antitumor immuno-based therapies and the application of next-generation
sequencing to mutation profiling have produced insights into the specific targets of antitumor …

MHCquant: automated and reproducible data analysis for immunopeptidomics

L Bichmann, A Nelde, M Ghosh… - Journal of proteome …, 2019 - ACS Publications
Personalized multipeptide vaccines are currently being discussed intensively for tumor
immunotherapy. In order to identify epitopes—short, immunogenic peptides—suitable for …

CrossDome: an interactive R package to predict cross-reactivity risk using immunopeptidomics databases

AF Fonseca, DA Antunes - Frontiers in Immunology, 2023 - frontiersin.org
T-cell-based immunotherapies hold tremendous potential in the fight against cancer, thanks
to their capacity to specifically targeting diseased cells. Nevertheless, this potential has been …

ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification

L Schneider, T Kehl, K Thedinga, NL Grammes… - …, 2019 - academic.oup.com
Motivation Breast cancer is the second leading cause of cancer death among women.
Tumors, even of the same histopathological subtype, exhibit a high genotypic diversity that …

MAPDP: a cloud-based computational platform for immunopeptidomics analyses

M Courcelles, C Durette, T Daouda… - Journal of proteome …, 2020 - ACS Publications
The immunopeptidome corresponds to the repertoire of peptides presented at the cell
surface by the major histocompatibility complex (MHC) molecules. Cytotoxic T cells scan this …

[PDF][PDF] A primer on recent developments in cancer immunotherapy, with a focus on neoantigen vaccines

TA Tokuyasu, J Huang - Journal of Cancer Metastasis and Treatment, 2018 - hub.hku.hk
Cancer immunotherapy has now been conclusively shown to be capable of producing
durable responses for a substantial number of patients. Adoptive cell transfer and …

Industrial and Biopharmaceutical Research in Bioinformatics

S Padma - Bioinformatics and Computational Biology, 2023 - taylorfrancis.com
Bioinformatics is an interdisciplinary field that integrates the knowledge of computer science,
mathematics, and physics into biology. Automated methods for genome sequencing …

Cancer Immunomics in the age of information: role in diagnostics and beyond

Z Basharat, A Yasmin, N Masood - Current Pharmaceutical …, 2018 - ingentaconnect.com
Cancer genome sequencing is useful for diagnosis and personalized treatment. Analysis of
the sequencing data involves integration of computation, statistics and system biology …

VaccineDesigner: A Web-based Tool for Streamlined Multi-epitope Vaccine Design

D Trygoniaris, A Korda, A Paraskeva, E Dushku… - bioRxiv, 2024 - biorxiv.org
Background Multi-epitope vaccines have become the preferred strategy for protection
against infectious diseases by integrating multiple MHC-restricted T-cell and B-cell epitopes …