[HTML][HTML] SARS-CoV-2 variant biology: immune escape, transmission and fitness

AM Carabelli, TP Peacock, LG Thorne… - Nature Reviews …, 2023 - nature.com
In late 2020, after circulating for almost a year in the human population, severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) exhibited a major step change in its …

Spike deep mutational scanning helps predict success of SARS-CoV-2 clades

B Dadonaite, J Brown, TE McMahon, AG Farrell… - Nature, 2024 - nature.com
SARS-CoV-2 variants acquire mutations in the spike protein that promote immune evasion
and affect other properties that contribute to viral fitness, such as ACE2 receptor binding and …

[HTML][HTML] Molecular insights into the adaptive evolution of SARS-CoV-2 spike protein

Z Yao, L Zhang, Y Duan, X Tang, J Lu - Journal of Infection, 2024 - Elsevier
The COVID-19 pandemic, caused by the severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2), has substantially damaged the global economy and human health. The …

Age-dependent acquisition of pathogenicity by SARS-CoV-2 Omicron BA. 5

B Imbiakha, S Ezzatpour, DW Buchholz, J Sahler… - Science …, 2023 - science.org
Pathology studies of SARS-CoV-2 Omicron variants of concern (VOC) are challenged by the
lack of pathogenic animal models. While Omicron BA. 1 and BA. 2 replicate in K18-hACE2 …

Coordinated evolution at amino acid sites of sars-cov-2 spike

AD Neverov, G Fedonin, A Popova, D Bykova… - Elife, 2023 - elifesciences.org
SARS-CoV-2 has adapted in a stepwise manner, with multiple beneficial mutations
accumulating in a rapid succession at origins of VOCs, and the reasons for this are unclear …

Phenotypic evolution of SARS-CoV-2 spike during the COVID-19 pandemic

W Furnon, VM Cowton, G De Lorenzo, R Orton… - Nature …, 2025 - nature.com
SARS-CoV-2 variants are mainly defined by mutations in their spike. It is therefore critical to
understand how the evolutionary trajectories of spike affect virus phenotypes. So far, it has …

Defining neutralization and allostery by antibodies against COVID-19 variants

NK Tulsian, RV Palur, X Qian, Y Gu… - Nature …, 2023 - nature.com
The changing landscape of SARS-CoV-2 Spike protein is linked to the emergence of
variants, immune-escape and reduced efficacy of the existing repertoire of anti-viral …

[HTML][HTML] Subsequent Waves of Convergent Evolution in SARS-CoV-2 Genes and Proteins

D Focosi, PG Spezia, F Maggi - Vaccines, 2024 - mdpi.com
Beginning in 2022, following widespread infection and vaccination among the global
population, the SARS-CoV-2 virus mainly evolved to evade immunity derived from vaccines …

Deep mutagenesis scanning using whole trimeric SARS-CoV-2 spike highlights the importance of NTD-RBD interactions in determining spike phenotype

R Kugathasan, K Sukhova, M Moshe, P Kellam… - PLoS …, 2023 - journals.plos.org
New variants of SARS-CoV-2 are continually emerging with mutations in spike associated
with increased transmissibility and immune escape. Phenotypic maps can inform the …

Emergence of SARS-CoV-2 omicron variant JN. 1 in Tamil Nadu, India-Clinical characteristics and novel mutations

ST Selvavinayagam, S Sankar, YK Yong… - Scientific reports, 2024 - nature.com
In December 2023, we observed a notable shift in the COVID-19 landscape, when JN. 1
omicron emerged as the predominant SARS-CoV-2 variant with a 95% incidence. We …